RNA id: XR_003403059.2


Basic Information

Item Value
RNA id XR_003403059.2
length 2353
RNA type misc_RNA
GC content 0.52
exon number 15
gene id fnbp4
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18204651 ~ 18214487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCTGTGCTGTCGCTGCCTTCACACTGCACTGAAAGGGAAGCTGATGTTGTGCCAGCAGCTCGGCTCCATTACCAGCGCCGCCACTCGCACACAGTGATGGGAAAGAAAACCCGCACAGGGCCGGGCCGACGGACCATTTTACAGCTCTCACCGCCAGGACTGCGCAGCGGCACAGGAACAGCCCGAGACGAGGCTCCAGGCTCTGGCTCTGAAGGGGAGACAGAGGGTTATACAAGCAAGGACGGGCAAGGAGTCTACAGGGAGATGAACATGGAAATGAAGACCTCAGCAGTGAAGGCAACACAGGGTTTGTCTTTGCTCGGTGCTTATGAGGACAGTGAGGAAGAAGATGGATCTGAAGCAAGCAGTTCTGCTGCCAAAGCAAAGCTCAATCGCTCTGCAGACATTGACAGTACACTTGCAAGTTTTATGGCTGAAATTGATGCTATCACCACTCAGCCAGTCCAGACCGATGATACTACAAAGGAGGAGCCCAGTGATCCAGCACCTACCCCTCCTCGCCCTGAACCCAAGACAGAGCAGCATGCTTATGCACAGAATGGCTCTGCACAGGAATTTCAGTATAATACACAGTACTCCCTGGCAGGAGCTGGGGTTGAAATGGGTGATTGGCAGGAGGTATGGGATGAGAACACGGGCTGCTACTACTATTGGAACACCCAGACTAATGAGGTGGCCTGGGAGCTTCCCCACTATCTAGCCGATCAGATGCAGAGTCTACAGCAGTACTCAGAGAGCTCATCTGTTAACGGCAGCGAGGTGTTGCATCACGCAGCGAGTTATCCTGAACAGCACTCCGCTCCGACTGTCACTGCATCGAAACAGGAACCAAAAAAGAAGgaagtaatggAGAGTGTAGTGGCTTTAACTagtgatgaggaggagaggaaaggggTAGCTGCCTCTCTCCTCGCACCTCTAATACCACCTGAAGTGAAAGAGGCAGAAGAGAAATGGAGGAAGAAGATTCTGGCGATGGACGAGAAGGTGGAGAATGCGCCGGAGGTTGAGGGAGAGGCGTCTTTAGGCTCTCCTGCACTGTGTGATGGAGAAAGCCCTGCTCAGTGTAATCCGCAAAGTAGGAACCACTCTAGAGAAAACTCTGATGGAGAAGAGGAGACAGAGGAGGATACCAAGGAACTGGAGCTTGCATTAGAGAGGAAAAAGGCTGAACTTCGTGCCTTAGAAGAAGGTGATGGCAGTGCCGGTGGTTCAAGCCCCTGTTCTGAGGCAAGTCAAGAGGGTTCTCGAGGCCTCTTGAAGAAGACTAAGTGGAAAACAGCCTTTCTTCGGGCACAGAGTCCTGACTCAAACAGCAGAGGATCTGAAAAACCAGAATGGGACACTGCAGAACCTGTGGATATAGCACATTCCAAAGCAGCTGAGAAACAAGAAGATAAAGAAGAACAGGAAAGAACTGTATCCAAAATACAAGAGGAGGATACAGCAGACCTCAAGtttcagattgGAGAGCTTGCCAATACCTTAACCAGCAAAATGGAATTCTTGGGAATTGACAAAAAGGCCATCTCCAACTTTCAACTGCTTTTGTTACAAACTGAGACGCGGATAGCAGATTGGCGAGAAGGAGCACTGAATGGAAATTATCTCCGCCGCAGGTTGCAGGAAGCTGCTGAGCACATAAAACATTACGAACTTAACGCCACTCCCAAGGGCTGGTCCTGCCACTGGGACAGAGATCACAGGCGATACTTCTATGTGAATGACCGGACCAGTGCCTCCCAGTGGGAGTTTCCAGCAGtgaaggaagaagaggaggatgcCAAGCCACCCCAGCCCGCTGCAGTTTGTCAGGGAAATGCAGGTCAACTACCTCCTGAGGCTTCCAGTGGTTCAGCAGAAACCCAGTCCTATTGGTCAGCTCCTCAACCTCCACTTCCTCCAGACACACCCCCTCCTCCTGCAGAacaaccacctccaccaccacctcctcctgAATCCCCTCCGCCACCCCCTCCTCCACCCCTCAGCGATGATGGAGAGATCGAGGAGGTAGAAATGGAAGATGAGGATGCTGAGCCACCTGCTCCTGGAACAGAGGAATTTAGGCCAGTGAAGCAGCAGCCACTCAAGGAGCTGTGGCTAAAGCCCAGAAGAGGAAAGCTCCAGGCTCAGAACAGCTGAACAAAGCCATCACTATTGGGAGCAGTCCCATACTCTACACCCAGCCTACTGCCACAGCAGCCCCTATAATCACTGCAAATGCTTATTGGGGAATGACTGCAGTAGCTGCACCTGCTCTGCCATCAGAGCCTTTGGTTCCACCAGTGCCAGCTGCACCCTCACAACCTCCACTTCCACCACCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178625 lncRNA downstream 837 18204653 ~ 18205316 (-) False fnbp4
TU178583 lncRNA downstream 93676 18112252 ~ 18112477 (-) True G150776
TU178426 lncRNA downstream 293298 17912640 ~ 17912855 (-) True G150631
TU178319 lncRNA downstream 446454 17759421 ~ 17759699 (-) True G150551
TU178258 lncRNA downstream 507069 17698687 ~ 17699084 (-) True G150495
TU178654 lncRNA upstream 40588 18255075 ~ 18255418 (-) True G150834
TU178674 lncRNA upstream 86806 18301293 ~ 18302959 (-) True G150854
TU178677 lncRNA upstream 90422 18304909 ~ 18305279 (-) False etfbkmt
TU178697 lncRNA upstream 91722 18306209 ~ 18306443 (-) True G150875
TU178713 lncRNA upstream 124015 18338502 ~ 18338714 (-) True G150891
XM_026920016.2 mRNA downstream 3528 18184111 ~ 18202625 (-) False agbl2
XM_026920017.2 mRNA downstream 3528 18184111 ~ 18202625 (-) True agbl2
XM_026920018.2 mRNA downstream 3529 18184111 ~ 18202624 (-) False agbl2
XM_026919207.2 mRNA downstream 41343 18113006 ~ 18164810 (-) False ptprz1a
XM_026919206.2 mRNA downstream 41343 18113006 ~ 18164810 (-) False ptprz1a
XM_026918637.1 mRNA upstream 1746 18216233 ~ 18218741 (-) False lrrc10
XM_026918636.2 mRNA upstream 1746 18216233 ~ 18218280 (-) False lrrc10
XM_026918635.2 mRNA upstream 1746 18216233 ~ 18218274 (-) True lrrc10
XM_026919382.2 mRNA upstream 13626 18228113 ~ 18245704 (-) True washc4
XM_026920049.2 mRNA upstream 88655 18303142 ~ 18305329 (-) True etfbkmt
XR_003403060.1 other downstream 446114 17754384 ~ 17760039 (-) True LOC113529452
TU177725 other downstream 1147247 17053366 ~ 17058906 (-) True LOC113529460
XR_003403120.2 other downstream 1452872 16753176 ~ 16753281 (-) True LOC113530224
XR_004578830.1 other downstream 2214059 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 2978121 15220972 ~ 15228032 (-) False LOC113529695
XR_003403119.2 other upstream 90151 18304638 ~ 18304801 (-) True LOC113530223
XR_004578649.1 other upstream 140512 18354999 ~ 18364036 (-) False parp6b
TU178843 other upstream 210832 18425319 ~ 18428973 (-) True G150991
trnat-agu_10 other upstream 927756 19142243 ~ 19142316 (-) True trnat-agu_10
TU179498 other upstream 1165169 19379656 ~ 19392896 (-) True zgc:114188

Expression Profile