RNA id: XM_034307371.1


Basic Information

Item Value
RNA id XM_034307371.1
length 1214
RNA type mRNA
GC content 0.43
exon number 5
gene id etfbkmt
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18303142 ~ 18305329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCGACTCACTGAGCTGTTTATCGATATGAACCGAggactgtttatttatttacgtgGCAAAGACACGTTGAGAAAAACCCTTCAGACTGTTCGACAAAGAAGCATTCGCCATTATATGAAATACTCTTTACAGTGAAATGTCGCTTCTGGACGGAGAGAGCAGAGTTGTGGCCACTTCCTGATCCCTTCTGGGCTATATACTGGCCTGGGGGACAGGCACTGACCAGGGAAGATACCATGATCAAGAAGCTGGTTCACCCAGGGcgaggctcagccattgcactcCGGTTGTGCTGACCCCtgcgaattccccaaatgtatcTTCTAAACAATCCAGAGCTGTCAGTAGGTAGAAGAGTGCTGGATCTCGGATGTGGCTGTGGTGCATCTGCTATTGCTGCTAAACTCAGTGGGGCTGCTCATGTTGTGGCCAATGACATTGATCCAATTGCTGCTATTGCCACAAAGATGAACTGTGAGCTGAATGGATTAGAGCCCTTGCCTTGTGTGACTGACAATCTGATCGGTTCAGAACCTGAGAACTGGGACCTCATCCTGCTGGGAGACATGTTCTATGATGAGACTCTTACAGACAGCTTACATAAGTGGCTCTACAAATGTGTTAAGCTTCACAGAACACAGATCCTTATTGGAGACCCAGGACGGGCTCAGTTTGAGAGCCATGACGTCAAGGCACTGTTGTATGAACGGGCTCGGTTTGAGTTACCTGACTCGGTTCGAGAGGAAAATTATGGACTGACAAGTAGCACAGTGTGGTGCTACAGACCTGATTACTAAGGTACTTTTTCAACAAGAAAATCTGTGTATCTGTTAACAATAAGCAGTTCTATGCTTTAAGAAtactttaaaaaacataactgACACTTCACACTCATTTTAATAAGatgtacattatttataggACTTGGCAGGTTACTGTGAGAAAGCACTGGTTGTAGGATTTTCACCCATATGTAatatgaaagctttttttttttcctgtaagaaCGCTCGAGTATTTCTGAATGTTTCCAAAATTTCAAATATGCAAAATCTGTCCACTTCAGAGTTCATTCAAGAAACTGTTCAAGTTAGAACCATTCAATCAAAAAGAGATTACACtcatggaaaataatcatcctTTAGGCAGGAGAAGATGCAAGAATCTCCCTCACATCACCTCTCTCCTGATctcttccctttctttctttc

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178674 lncRNA downstream 183 18301293 ~ 18302959 (-) True G150854
TU178654 lncRNA downstream 47724 18255075 ~ 18255418 (-) True G150834
TU178625 lncRNA downstream 97826 18204653 ~ 18205316 (-) False fnbp4
TU178583 lncRNA downstream 190665 18112252 ~ 18112477 (-) True G150776
TU178426 lncRNA downstream 390287 17912640 ~ 17912855 (-) True G150631
TU178697 lncRNA upstream 973 18306209 ~ 18306443 (-) True G150875
TU178713 lncRNA upstream 33266 18338502 ~ 18338714 (-) True G150891
TU178761 lncRNA upstream 67877 18373113 ~ 18376841 (-) True G150925
TU178837 lncRNA upstream 116257 18421493 ~ 18422644 (-) True G150988
TU178838 lncRNA upstream 117421 18422657 ~ 18423325 (-) True G150989
XM_026919382.2 mRNA downstream 57438 18228113 ~ 18245704 (-) True washc4
XM_026918637.1 mRNA downstream 84401 18216233 ~ 18218741 (-) False lrrc10
XM_026918636.2 mRNA downstream 84862 18216233 ~ 18218280 (-) False lrrc10
XM_026918635.2 mRNA downstream 84868 18216233 ~ 18218274 (-) True lrrc10
XM_026918629.2 mRNA downstream 88659 18204651 ~ 18214483 (-) True fnbp4
XM_026919598.2 mRNA upstream 13388 18318624 ~ 18338423 (-) True arid3b
XM_026919599.2 mRNA upstream 13388 18318624 ~ 18337491 (-) False arid3b
XM_026919897.2 mRNA upstream 35217 18340453 ~ 18347647 (-) True LOC113530128
XM_026920068.2 mRNA upstream 48738 18353974 ~ 18364036 (-) False parp6b
XM_026920069.2 mRNA upstream 48738 18353974 ~ 18364036 (-) False parp6b
XR_003403059.2 other downstream 88655 18206153 ~ 18214487 (-) False fnbp4
XR_003403060.1 other downstream 543103 17754384 ~ 17760039 (-) True LOC113529452
TU177725 other downstream 1244236 17053366 ~ 17058906 (-) True LOC113529460
XR_003403120.2 other downstream 1549861 16753176 ~ 16753281 (-) True LOC113530224
XR_004578830.1 other downstream 2311048 15990080 ~ 15992094 (-) False islr2
XR_004578649.1 other upstream 49763 18354999 ~ 18364036 (-) False parp6b
TU178843 other upstream 120083 18425319 ~ 18428973 (-) True G150991
trnat-agu_10 other upstream 837007 19142243 ~ 19142316 (-) True trnat-agu_10
TU179498 other upstream 1074420 19379656 ~ 19392896 (-) True zgc:114188
XR_003403122.1 other upstream 1082005 19387241 ~ 19387366 (-) True LOC113530226

Expression Profile