RNA id: TU178695


Basic Information

Item Value
RNA id TU178695
length 2813
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G150873
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18342243 ~ 18345729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtactagtaCAACAGTGCacgagcaaaaaaaaaaaaaagagcataagAGCAAACCcatgaaatttaaaatcaaatctgatcatgaacattttataaatgaagCCACGGGTTTCCAATATTGGTGCAATGTGTAGAGGAGTGCTGGGGGTTAAGCAGATATCACTTAATATCACTTAGCAAATAATATTGTTCAACAAATAATATCATTCAGTGATTTTAGAAAACGGCTAAAATAGAGATTACATCTCTAAGagagaacattttatttcattttaaattaagtgaatttccccactgtgggatcaataaagtttatcttatcttattaacATTTGCAGAATTATATGCAAAAATTTAGCCATGggtttatgaaaaatattttgggTGAGATAGCCTTACATTACCTGTTAACTACATGAGCTCTTATTGCTCTAGTGcaaaaattaatgaatcaaaTGATGGACATCAAATTTGTCTTGGTCGATCTACTACATTTGGGGAAGATTGTGTGTAGTAATTCACAAAACTGCCCCTTTAAAAGAGACATGACTGTTGTATGAAGTTGTATGTATGTGCCAACACTCACCATGACTGCAGAAGTCTATGCTTTGTCAATGCCAAGCTCCTCAGGTGTAGGAATTCCCAGCTCATTAAGCGTGGGACGAAGCTCTTGGATAACATATGGATAGATCTCTTTGTGTGGACCTGCTTTGTCCTTTAACTGCCTCAAGAATACGGATGGCGCTGCCCAAGTCATTTAGTCGCCGACAGGCTCTCAAAGCTGCTTCCAGGATTTTGGGCTCAGGTACCAGGTCATAACCAATCAAAGTGTTCATACCTTTCCTGAGCTCCCAAGCATCAATATCTGGTTTGTTGAAGTAGGTCACCCAGCGGGCATCAAACTCCTCATCTGTCTCCTGCTTGCCATGGGAGTAGCAGCGGCTAGCTAAAGGAGCTGACAGGGAAACAATACATTAGGGGGAAAAACAGCAGCCTGTAAGCGAACccaaattattaatgaaatacattacatggcaaaagtttgtggacacctgaccaatcacaccaaTACGTGCTTGTagaaacatcccattccagatttattctccctTTTGTTAGTAGGCAGTGTTCACATTTCTATAATCGCTGTACCAGTAAAAGCACTGTTTTGTAATGGGACACTCAGGTCACTCACTGAAAGTAAAAATGACAGGGTCCCTTAAATAGAAGGCAACATGCACCGTGTATCTTTATGGCATGTGTCATGGCAGTAACATAACAGGTCCTCAGTAGATGAGCCGTTCTGGCGTATGTGGAATATATATAGCAGGGATGATAAATAAACCGTCAGGACGTGATGCATAGTTTCTGTATGTGCAAAGTTGAGCTCTGGGATCTGACCTCTAACTCAGTAACACTACCCCGACTATGGCTAGGTGAGTGTAAGAGTACACTGATGGTGGGCATTGGCAGAAGATTACAGCAAGGTTCCTCTGGGACATGTCACTAAGTTAGTAGATTGAGTACATTTTTGAGAGCACACAATCTACAGTAGGTTTTCAGCATTAGAGGAATACCAGAAGTTCTCCCATACTAGCAGTAATCATGAAGTTCACTCATAGCAGTGGCGATATGTATGATATACAACATGCCAATAATGATGGGAAGACAAAGCCTTGcagaaaatgtatttctgttgTAAAACCTTTCAAACTGAGATCTTTCATATGTCCCTAGAATGTGTATACCATTCAgaagcagtaaaataaaaactcaaCCCCAGAACCAGAACGGCAGTGATTTTATCATTTTCAAGTCATGCCTTGTgtcacaaaaacacaatgttGTTTCATTAACAATGGATCAGACTTGATAATGTTTTGATAAAAGGCCTCTCTGGGTGTGACAGTGTAATCTGTAATAAACAAAGTGGCATATCAGAAAGTGTGACATGAGAAATAGACTTCGGGCTGTAAACACTGTTATTCATTTTCAATCAGAGCCAAAAACATACTCTCtggaaaaagcaaagaaatgttATGCAGTGATGAGCACACAGCACCCATGCATAATGTACATCTTATTCATTTTGACCACGAATCACTTTCATACAGATTAAATTTATGATATAGATATATGtaatgtttgtttgcttgtgttAGGGTTTATTGCCATACCAGCTTCAATGGCTATTTCATGGCAAATACAGGTATTAATCaaacattcaataaaattcAGCTTAAAAGGTCAGATATTTCTGTACAACATGACAACTCTATAAAAGATTCTTTAAATTTACTTGTGATAAACATTGTAATAGTTTTCCTGGGTCTATCTTACAAAACAAGTTTGTCCAGGATAAAAGGCGTAGTCTCATgacattgaaaaaaaacatatgtctTACAGTCAAGGGAGTGTTACAATATTGGCATTTTGGTGGTTCTTCGACCTTCAGTAAATACCCATGGGTCAGTCTGGCATGGCCACCGCGGCACCTTTTGTACACCTCTTGATCATATCTAGTTTTAAAAGGGTGggtgcacatttttatttgtctagGTAATGTAATCATTAAAACAGTGTTAAGTCCTACAGTCTAAGGCAGAcatattcaactaaaatttgtaaaggtccagTTCCTTTTAATGCTATGAAAAGATAATTTGAGGTTTTTATACTTGCACACATATTTCTTTGTCcaaatctttttaaatgttttgtcttcagtgataatgtttctttaaacaagccatgttgTCAGTCCACTAATCGGACTatagaaggtaaaaaaaataataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178595 lncRNA upstream 158233 18182555 ~ 18184010 (+) True tmem17
XR_004578772.1 lncRNA upstream 203098 18130846 ~ 18139145 (+) True LOC117598020
TU178394 lncRNA upstream 427001 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 429660 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 501794 17832766 ~ 17840449 (+) True G150590
TU178734 lncRNA downstream 21153 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 77829 18423558 ~ 18424220 (+) True G150933
TU178775 lncRNA downstream 79588 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA downstream 79588 18425317 ~ 18444052 (+) True G150932
TU178797 lncRNA downstream 184410 18530139 ~ 18530708 (+) True G150952
XM_026919594.2 mRNA upstream 24518 18306241 ~ 18317725 (+) True LOC113529962
XM_026919596.2 mRNA upstream 24518 18306241 ~ 18317725 (+) False LOC113529962
XM_026919595.2 mRNA upstream 24518 18306241 ~ 18317725 (+) False LOC113529962
XM_026919597.2 mRNA upstream 24518 18306242 ~ 18317725 (+) False LOC113529962
XM_034307370.1 mRNA upstream 24518 18306242 ~ 18317725 (+) False LOC113529962
XM_026920066.2 mRNA downstream 22317 18368046 ~ 18375364 (+) True pkmb
XM_026919197.2 mRNA downstream 141755 18487484 ~ 18490931 (+) True pim3
XM_026919196.2 mRNA downstream 146016 18491745 ~ 18503991 (+) True brd1b
XM_026919195.2 mRNA downstream 146019 18491748 ~ 18503875 (+) False brd1b
XM_034307441.1 mRNA downstream 222884 18568613 ~ 18577366 (+) False prr5l
TU178368 other upstream 499708 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 499708 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 499708 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2300996 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2522670 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 329281 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 375866 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 730866 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 775435 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 914895 19260624 ~ 19263893 (+) True G151401

Expression Profile