RNA id: TU178799


Basic Information

Item Value
RNA id TU178799
length 595
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G150954
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18537261 ~ 18537855 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttCCACCAAAGTTCCTTTTCACATGTCATCAGCATGGTTGTTGCGCGTTCCAAAATACCTGATTTATGTTCATTATGCAGCATAAGGACCAACTGATAAATCCAAGAACGATGCACTGAGAATtcaagacttttttaaaatgtccttaTTTCTCTCTGTGCCACCAGGTGTATGtgtattcaggttttttttttttttttgtctaattgtGCATTTATATTTGTCCCTAGTAACTCACATCACCAAAATCCTTCCAAATAGAAGCTTGGTGTCCATTCAGTTTTTCTTTGGTCTGTAAAAAATTTATCATCACTGGAGAGAAAATGTTCTGTCAGctccaaaacaaatccacaatCTTGTTCAGTCCAGCAGTATGCATCTATAAATTTCTGAGAATGATCCATTATCCATTCTGTTGTGGGTTCAATCTGATCATCTACACAAGTACCAGGAGCAGGTCTTCATTCCCCTTACTGATGGGTGGATAaacagactagaaaatgttgatGGTAGTTGTAGCCATAGAGGATGGAGTGGAGTGTCTGCACCCAGCACCTTCTCTCAGAAGCCTCAACTACAGCTGATGTCAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178797 lncRNA upstream 6553 18530139 ~ 18530708 (+) True G150952
TU178775 lncRNA upstream 93209 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA upstream 93209 18425317 ~ 18444052 (+) True G150932
TU178777 lncRNA upstream 113041 18423558 ~ 18424220 (+) True G150933
TU178734 lncRNA upstream 170153 18366882 ~ 18367108 (+) True G150900
TU178803 lncRNA downstream 14038 18551893 ~ 18552137 (+) True G150958
XR_004578835.1 lncRNA downstream 63684 18601539 ~ 18620821 (+) True LOC113530068
XR_004578836.1 lncRNA downstream 63713 18601568 ~ 18620820 (+) False LOC113530068
XR_004578834.1 lncRNA downstream 64289 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA downstream 64290 18602145 ~ 18620821 (+) False LOC113530068
XM_026919196.2 mRNA upstream 33270 18491745 ~ 18503991 (+) True brd1b
XM_026919195.2 mRNA upstream 33386 18491748 ~ 18503875 (+) False brd1b
XM_026919197.2 mRNA upstream 46330 18487484 ~ 18490931 (+) True pim3
XM_026920066.2 mRNA upstream 161897 18368046 ~ 18375364 (+) True pkmb
XM_026919597.2 mRNA upstream 219536 18306242 ~ 18317725 (+) False LOC113529962
XM_034307441.1 mRNA downstream 30758 18568613 ~ 18577366 (+) False prr5l
XM_026919460.2 mRNA downstream 30758 18568613 ~ 18577365 (+) True prr5l
XM_034307440.1 mRNA downstream 31231 18569086 ~ 18577365 (+) False prr5l
XM_026919459.2 mRNA downstream 41256 18579111 ~ 18586692 (+) True api5
XM_034307277.1 mRNA downstream 84333 18622188 ~ 18634768 (+) True hsd17b12a
TU178368 other upstream 694726 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 694726 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 694726 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2496014 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2717688 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 137155 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 183740 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 538740 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 583309 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 722769 19260624 ~ 19263893 (+) True G151401

Expression Profile