RNA id: TU178953


Basic Information

Item Value
RNA id TU178953
length 1069
RNA type TUCP
GC content 0.42
exon number 5
gene id urahb
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18721595 ~ 18724686 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCAGGATAAACACACAGCCAGTTCAGTCAGAATCACCCTCATTTCCGAGTGAGCGGGCAAGCTGGCCAGATAAACATTGCATCTTTCTGCACAACAAagTTACATCAGATATCACCACTTCATCGTCAGAGGGACTACAAGAGGAAAAAGGATTCaggactgatttatttttattttttgtcttgctGAACAGATACGTTTGAGATGGATAGTCCTCTTGTTACCCATGTGCTGAACACTGCAGATGGGGTTCCTGCAGCACGCATTGCCCTCAGTCTGCATCGTCTAGACCCTCAGATGGCCCTCTGGAACCTTATCACTACTGGAACCACAGATGAGAATGGCCACTGTCCAGGGCTAATCACCAGACAAGATTTCACCATAGGGATGTACAAATTACGTTTTGAGACTGGACAGTATTGGGAAAGTTTGGGCCAGACCAGCTTTTACCCATATGTAGAGATTGTCTTCACAATAACAGACCTGGACCAGAGGTTTCATGTGCCTCTACATCTCAGcagatacacatacagtgtCTACAGGTGTAGCTGTAGGCAGTAGTAGGCACCTGATTCAGCTGATTCGGCTAGTTGAAAGAACTTTTTTGAGATGTGTTCATCCTTTTCTCTTTGTAACACACCAAATTCAGCCTTGGTAATGACCTGGTGAGTTGAGTCTAGTGTATTAACTCCTAAAATGTGTAGTGATGTGGTTTTGAGACCTTGATTTTTCTGTCTGCTGTAAAGATTGACCAATctacaagcttttttttattgcttttctttttaaatggaCTGTCCATATGGTGTTAGAATACAGCACTAAACATATGAAAgttaacattttttgtaaaGGGTACTGAAAGTAACgaataaataaacttttctaCCTGGCATGGTGGTGTTAGTGTTTCtgtctcacagcttcagggctcaatcctgagctcgggttactgtctgtatggaggttttcatattttccatgtgtttgtgtggtttctTCCATGATCACTGGTTTCTtttcccatctcccaaaaatgCTAGTAGCCAGATTGGGTACTCTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578835.1 lncRNA upstream 100774 18601539 ~ 18620821 (+) True LOC113530068
XR_004578834.1 lncRNA upstream 100774 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA upstream 100774 18602145 ~ 18620821 (+) False LOC113530068
XR_004578836.1 lncRNA upstream 100775 18601568 ~ 18620820 (+) False LOC113530068
TU178803 lncRNA upstream 169458 18551893 ~ 18552137 (+) True G150958
TU178948 lncRNA downstream 23141 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 220589 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 230363 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 385157 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 501963 19226649 ~ 19227893 (+) True G151395
XM_034307186.1 mRNA upstream 14284 18685137 ~ 18707311 (+) True glg1a
XM_034307187.1 mRNA upstream 14284 18685137 ~ 18707311 (+) False glg1a
XM_026919693.2 mRNA upstream 38167 18675010 ~ 18683428 (+) False rfwd3
XM_034307537.1 mRNA upstream 38167 18675464 ~ 18683428 (+) True rfwd3
XM_034307402.1 mRNA upstream 49543 18659641 ~ 18672052 (+) True ticrr
XM_034307138.1 mRNA downstream 3847 18728533 ~ 18754646 (+) False tdrd12
XM_034307136.1 mRNA downstream 3917 18728603 ~ 18754646 (+) True tdrd12
XM_034307141.1 mRNA downstream 3917 18728603 ~ 18754646 (+) False tdrd12
XM_034307140.1 mRNA downstream 4147 18728833 ~ 18754646 (+) False tdrd12
XM_034307139.1 mRNA downstream 4304 18728990 ~ 18754646 (+) False tdrd12
XR_004578809.1 other upstream 38167 18675010 ~ 18683428 (+) False rfwd3
TU178368 other upstream 879060 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 879060 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 879060 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2680348 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578793.1 other downstream 351909 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 396478 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 535938 19260624 ~ 19263893 (+) True G151401
XR_004578759.1 other downstream 624932 19349618 ~ 19384904 (+) False srpk2
TU181223 other downstream 3327928 22052614 ~ 22058158 (+) True LOC113529593

Expression Profile