RNA id: TU178969


Basic Information

Item Value
RNA id TU178969
length 5680
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G151084
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18955049 ~ 18997932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTACTCAGCTTGGTAACGCTGTTAAAAATGCATTAGTGCTGTGTGAAGAGAAGATCTAGAAGTCTGTGGAATCGCACTGTGGCCACAGAACATGTGTGTCAGGGTCTTACTGGACTATAGTGTATAAAATGGgttaaaaacattgttacagaaaaacaagCAATGAGAAGAGAAGATCTTGTTacaatgattatttattaaatttaaaatatctttagcACAGATTAAAAATCAGACACCTCCAACTATCATGATCatcatgaatgaaaaataaacattcctAAAAAACCTTCTCCGTTCATAGGATACATCTTCCCCTTCATAGAATATTTCATTTGAATAAGAATGTACATTTCAACGCACAGGGCTGAGGCAAATCATAACACTTTTGGGTTTGTATGAAGCCGACTATCACATGACTGCATGGTGCGGTGTATTGAAAGTAATCTTTAAAAGTTTACTATCAATTTTTAAATAAccttattcaaaatattaaGTGCTCcttataaaataaaggaaacatAATTACAGCtccctgtttattattatggctCTGGCACTTAGAGAATAAACTTGGGCAATAAAGGAACATATCTGCCTCTGTTGTTATTAATGCACATTAAAGACGTTTTTCATAAACTTATGAAACACAACAAATATTGCCATATTAATAGAATTAGCTTATTTTAAGCCTCTTTTTCtatctacatttattttgttgttgcgTGGCACCAAGTTCAAAGTTCAGATGTGGTCCTTcactgcttctcttttttctcctgaCTGTTTGCCTCAACCCTACCTTTACAAATGTAAAGACAAGTTtacaagaaacaaaacacaatggggATGACAGGCAAAGGAAACAACCACTTACAGTACTTAAAAATGTCACAATTTTCCACAATTTTTATGAGCTAATaattgtttctattttttttattctttgtttttagCACATGCCACATGAGACTTTGATTATAAAAGTACCTGAAATAATTGCTAGAATATCAGCATGCATAGCTGTTCGGTATCTACACTTATTTACAGAGATGGCGGACATCTTTACATTTTTGGAAGATGACTAGGGGTTTCATGTCACAtgagaaaacaaaaccaaacaaaaggTGACCTGTTATGGTCATTACTCATATTAGCAGCTCTGCTACATACAGTAGATACTCATTCTACACTGGTTACGAAATGTTGGAGTACAAATATAGGAAAATGCTGTAAAGGGTCTGTGGCACATAGCACTAGAGGCCTAATGGGAGGACATGGGTTTTCAAAAGGGATCTACATGTGTCTCAACTACAAACCGTCACCCAGCACAAGACTCCCAGGACTGATGGAGATGATTATTAACTTACATTATAGTACAGTACATACAGCCATGTGTGCAGTTCAGTATGTGCATTCAGTGACTTGCCAGTTCAATCTAAGTACTTaaagaatagaaagaaaaacatttacagtgcCAGAGTACTTAGAACTAATTCTAaacataataaaagaaatacacGCTTAATCCTCACATTTATTGCAAAATTAAAGCTGCTCATTTGGATATTTTgcatgagataaaaaaaaaataccagtaCTGGAAGACTTGAATGGATTCCTCAGCAACGACTGCAGACAGCTTTATTGCAAGAGCTTAAAGCTTAAATGGGAATTTCAAACCAAGGTCTCTCTCGTTAAATTTATATGTTTCTGTCTTAGATTTTAGTTATAACCTTGTTTATAACTGATCTTAGTTTCAATTGCTTTGGTTCGTTATCAGTATTGCtgcaaaatgacaaaagtgTATGTTGTGTCTTACcataataaaaccaaataaaataaacactatttATGATATTAAATGCCTGTCATGGGCATGCACAGATAAACATGACATCAAAAACATGTACActtttacacaaatatacaccGAGCACTTGTTTACTCCTCCCTATCCCCTTCTCTAtgtcttttccttctctctctctctctctcctgctctttgCTAAACAGGGCAGCATGTGATAAATGGCAGCGGTGGGTGCTTTCGCATGTTAATGTGATATCTCATAAAGCTTATCGCCCCAAACGGGTCACCAAGGTCAAGTGGTGAGGGGTTGAGCATAACAGCAGTAAGATTGCATCCCTCTCATTCTGCCTGACAGTGTCATTTCACCTTCTCGCTCACACACAGGGTTTCTCACAGACCTTCTGCGCTTCCGATGCTAAAAGTGAGAGGGAGCACTGTTTGGATGCTGGCTCTCTGTGGATCAATGGTAGATTTAATTTAGTAGAGAGACTTCCGAGAGGAATACAGTGCAAATGTAAACAAGGTACAGCGCTCCATAAAAGCATCGTCGCCTGTAGACAAGTGCACAGAGCTGTAATTCAGCCAGCGATTGCCGCAATAAAGTCATGTAAGCTGTTTTGTAGTGCTACAccagaactgcagtgtgaatctAGATTTGTTGGGACTTAACTGTCCAGCTTTTCAATTTTTCTTGGTTAAGTTCAGCTTTAAGGAAGGGTTAAAGCGCTTTAGCACAGCTTCCTTTTCATTCCGGTCCCTTGTTTGGATAGGGGACAGCACAGTATCTAGCACTGAAACCCCATTAGCTGTGGATAATCTCAGTCATGCTAGTCTTTACCTCGCTTCAACGCAGAACACATTAGCACTCCCGTACACTCTACTGTAATAGCGTATGTGCACTAGTCTAGAGAGTGTTTGTGCTGTTGCAGTCATGCAGAGGTGAAAACAAGGGCACAGGAAGAGCTCAGTCAGGTCCAGGGACTGTTCTGTAGACCTTAAACAGTTCCATCTTTATGTATAATAAGCCTCCAAATGTCAGAGAGATTGTGATGTTTCTGTGTAATTTTACTCATCAGCATGAGTTAGTTAGGAGTTTGTTAGTAGTGaggcttactttttttttcaggctggaTACAGGATACTGCTGCCAGTCCCCTTAACAAAGAGGAGATAGGAGGGGTAAGGAGGAGAGGGTAAGGAGGAGAGGGTGAGAGTGAGAAAGGTAATTTATTAACTTCCTCTAACCTCTCGGTGCCTGCACACTACAGGCTGACAAATGGCCTTGTGGAACAGGATGATGGTCTCTTATTACCTGCACCCTCTTTGCTTAATCCAAAAACAAGATTTCTAGGGTGGTTGCACATGCAGTAAAGAGATTGATGAAGTGGCCTTGTCTACATGACATGTAAATATTTGGCCGTATGGAGTATGAAGGTGGTGCTGGCTACACATACAGGTGTAATAAAGACAGCTAGGCAAGATGACAAGGGTGTCAGATGTTTCATACCCCCAACCCTGTTCTGGTTTTAGCTGCATTTGCCTGCTCTGTCTTTTTGTCCGCTTCTTTGTTTCAAGGTCAGAACATTCACAATATAATTCAagtttttgtttcagtttaagTGAATTGTGGCAAATGATGCCAACTTTGCTAACTTTCAGGTCTCCAgcattttcttcctttccttttttctgtttaaaacttAAGTTGAAAGAGTTGTAGAGCTTTCACCATATCACCCTAGAAATGTAATTACCAGATGAGTAAATACTGTCTGGTCCGAGTCTGCATATTGAACAGTATGGATGCATGGGCTAGCAAAGATTGAGTGACATTTTATATCCTTTTATATTTCCGCCTTCAAATGTGTATTAACTTATCATTCCAAAAGCAGGTAAGACTCAGAAAGATGCATCCTTTTGATGTCATGTTTATTGACTCGCTAACCAAAGGAATGTGCGACATCTGCGTACTTCAAAAGGCATTCAGGCatacacacgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcatttaGCTCAAGAGGAGGGAAATAAAATTCCTCACAGAATTTCTGGCTACAGCCTTGGCTTTATTCccataatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcctAACCAGCATGCTGTTACAGACTTCACCAGCTTGGGCTACAGCTGTGAATTCGTCTGCTTAAACAAGGCTGAGtctttgtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgccggGAGCCAGGAATACGAGTTTCTCTCAATGCTTGCCAGCCATTTGCTCCTAAACATTGGTCTTGGCTTTTCAGAGGCGCACAACACCGGTGCTATTGGAAGATAAAGAACAGGCCCATTTCAAGTCTTCTGCAGAGTTTCATGTGAAGCAACAGCGACAGCTTTCTTCCACAAGGAGGGGCATGAAACACGACTGTGCTCTAATTCTATCTGACATGTTTtccttctcctctctccatctttctgtcaCCTCCAAAAAAGTCTAAACCTATGGTACTAAGTCATGTGGAAGAAAAGCTGTGCCTCTGGCAGAGACGGACTACTGGACagttggttgtttttttttggtataatGTTACAATGGAGCAATCCTAACACAAGTTTCATCATGCTAATCGaactgactgactgaaagcAAGCAGCAGTAATAAAAAAGGCGAGAGGCGCACAGATATTATTTTACCTTGGTAACATGGCCTTGAAACTACTCCTAGCAAAAGAACTCTGGGAACATTTCTGACAACTAAGTGCCATCCCATGTAACTGATTTGTTCCCTCTTCAGAGCGATCTTCACTCTGTTACTCTAGCTGTTGTTGAGtctgaatgtgcatgtgtgtgtttacaggtgtcTCCTCCAGCAGTGAGAAGCAGATTTCATTTGATTGTGGCAAAATCCTTTTGACATCAGATGAATGGACAGTTTTTTGCAGCCTGCTTGTGTTCTCTGTACAAGGCAATAACCCATGAGCAAAGCCTCCTATGTAtagtacatacatatacatatatatatatatatatatatatatatactatgttTCATATTTCTTCTGCAAAGAGATATAAAGCCAGCCAAATTTTCCTTAATTCCAGCATTTCCTCCCTGAAATACATAAGAAAAGACGCAGCGTGCAGTGTTTTGTCAGTACATGACAATTGCATTCCACCATCATTTATATCCACTCTGTCTTAAAGAAACTTGTATTGGCTCAGTTTCAGGACTAGGAATTGTCAGTCATTTACATGACAGCATGCAGTGTCTTTACGCCATTTATCCTGTGTACAGTGAAGTTAGAAAGTCTGTATGTACACTCTCACAGCCTTCATCCTCGCGTTGTCAGTCTGGTCACTGAGGCTGTGGCTAGCCACCTGTCTACGTGAACTTTCAGGATCTTTTTGACAGGCCTCAAATCTTCGTCTTTGCCATTAATCACTCTAGAATCTTCTGTAGGGGTTGTAGATGATCATACCAATGTCTCTTTTATATCACCCCTTGAAAATTTCCTTGCTcatgctgtttttatgttttgacatcatgatttttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttctactGGCATTAATGGAGAGCCCAATTAGCTTTTCTGCTCAGGCAGTCTTGGGGGACACCTCTGAGGGCCAGACAAGGCTGAGTGAGGCCCTTAGGCAGCCGGCAGTATTACCACTCAACTCAGCTTTTGTCTCAAACACGCGATTAAAAGCTGCCAATGCCGCATTTTTGTCTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178978 lncRNA upstream 9107 18945275 ~ 18945942 (+) True G151093
TU178948 lncRNA upstream 158810 18747827 ~ 18796239 (+) False nfat5a
XR_004578835.1 lncRNA upstream 334228 18601539 ~ 18620821 (+) True LOC113530068
TU179021 lncRNA downstream 111911 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 228717 19226649 ~ 19227893 (+) True G151395
TU179336 lncRNA downstream 320054 19317986 ~ 19393161 (+) True G151417
TU179337 lncRNA downstream 320054 19317986 ~ 19393161 (+) False G151417
TU179341 lncRNA downstream 395942 19393874 ~ 19397489 (+) True G151419
XM_034307290.1 mRNA upstream 19816 18806932 ~ 18935233 (+) False wwox
XM_026919184.2 mRNA upstream 81858 18806926 ~ 18873191 (+) False wwox
XM_034307289.1 mRNA upstream 95714 18806927 ~ 18859335 (+) False wwox
XM_026919555.2 mRNA upstream 148926 18799343 ~ 18806123 (+) True hprt1l
XM_026920021.2 mRNA upstream 158790 18777781 ~ 18796259 (+) True nfat5a
XM_026919585.2 mRNA downstream 123219 19121151 ~ 19125201 (+) True faap24
XM_026919998.2 mRNA downstream 128947 19126879 ~ 19140940 (+) True slc7a10b
XM_034307366.1 mRNA downstream 151135 19149067 ~ 19154118 (+) False zgc:153293
XM_026919609.2 mRNA downstream 151135 19149067 ~ 19154108 (+) True zgc:153293
XM_026919610.2 mRNA downstream 151135 19149067 ~ 19154106 (+) False zgc:153293
TU178953 other upstream 230363 18721595 ~ 18724686 (+) True urahb
XR_004578809.1 other upstream 271621 18675010 ~ 18683428 (+) False rfwd3
TU178368 other upstream 1112514 17834237 ~ 17842535 (+) True G150589
XR_004578793.1 other downstream 78663 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 123232 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 262692 19260624 ~ 19263893 (+) True G151401
XR_004578759.1 other downstream 351686 19349618 ~ 19384904 (+) False srpk2
TU181223 other downstream 3054682 22052614 ~ 22058158 (+) True LOC113529593

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049065 True 574 lncRNA 0.41 2 NC_007136.7 36728508 ~ 36737258 (+)