RNA id: TU179336


Basic Information

Item Value
RNA id TU179336
length 2372
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G151417
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19317986 ~ 19393161 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCATCTATCTATTTATCCTAAtaatttactgttttattcatgtatttttcagcaaaaaaagGAGgggggggaTCCCCCCCACTAAACCACACAAGCCATTCACAACAGCTTGCATTTTGCTTTGAAAACAACAGAGGCATTTTACTGAATTTAATCTGTAAAGGATCAACATTGGATATTATGGACAATATTGGATAACGGATATAGTTCTACTTCACAATCTAAGATGAAGCGATTGTCTAACATTGCTATGCTAATCCTCaataaaaccatatttacaCTACTTGCCTTGAAGGATCTCTCTGGTAAGATCTCAAGTCAAAACCAAGCCAAGCGTGAGACAGCCTAAATCTGTCAACATGAGAATATGACGAGCATGATTTAACTCTTAAAATCAAATTAACTGAATCACGGGAATTCCTGAAACACAAGCACCGCACTGAGAATTACACGTGCCATCAACCATTTGTTTTTAACCTAGTGAACTGTCTCATCGCCTGATAACATCTCCGCTGCAACCGCcagcttttttctctctcattatgATGCAAACTGGACCTAATGCAACACTGGAAATCACAGGTGCAGAGAGAAACATGAGAAAAACTGAAACCTAAAGCTCCTGGACTGCCTGATAAAAGATGTGCCATGATATTGAACAGACTGTTAATAGGACCAGACTTGGGAGCAGATGACTAAGCCCCCATTTATACTTGATTATCTATGCGTCTTGATTATCAGGATTATATATAAATAGGGATTAtccaaataaaagtgaaagtgtgaatccatctgtctttctgagCCACATTCGACACCTCAATTTCTTACAACAGGTGGCGCATGTGGTCCATAAATTTCAAAGACAGTGCCTTTAAAAATACTGGCAAGTGGCACAAAGATCATGATTTTTGATGCTGCAATGATCGTAGTGTATAAGCATCTGGTTGTAATCTTATTAAAATGCGATCCACATACAAGACGCATGAAATGTCCGGGTGTAAACAGGGCGTATAAATGCTCTAGAAGAGCTAAAACATACCTCTGGGACATAGTTGTCCCTCCTCTCACgctcctcctcctgcagctTGATGGAGATGCCTCTGACTGGCCCTCTCTGGATGCGCTTCATCAGATGGTCTCTTACCCAGCGATCTTGTTGCGGAGTTTCTTGCTGGGGATGATGGCGATCTCCTCACACACGCGCTTGTTGGTGTGGAAGTCATTGCCCAGGCGGGTGTAGTACTTCTCGATGATGACCCGAGCGGCCTTCTTCACCGTCTTTGTCCTGACGCGGCCCTATGGGCAGAAGAGCACAGACATCCATCAGACATGCAGAAGCCTAGCAGGATGGCATATTATCCACAGCAACCTCAGAACCCAAACTGAGCAAATCTCCAACATCTTCGTACAACAACCTTGTGTTCGTATCATAATCCAGGAAGCAAACTAAACTAATTCTCCAGCCATTTGGTGTCTATCTACTGttaaatacatataaacatgCTGGAGCCACTTCaagtgagagaagagaggaCTTGTAGTTTCTGAAGGTAGTGACAATCTTGAACAAGTGTATTTGATGGAATTTATCTGATAAATGCACCAGCATTAGCAATGAAGAGTCTCTAATAAAGATATAACAGCTATTTGCTAGCCAGGTGTTGgctaataaaatcatttttcagcTTCCTGTTACTATTCAGGCTTTTTCAtcaaaaacactataaatacagAATTCACACAAAATGGAGAACACTATGAACAGCAGAAATAAACCTATTAATTTTTTGCAACATAAAAAATTATCGCCATTACAGACTATAGCCAATTTCTTCTCCAACGTTAGCTAGCAGGACGCTAACCATCGGACGTCTTCTTGCGTCCAGACTGAGCCgattatttaatgattttaccCAAAATAAAACCTAAACGCGTGTAATATTCACACATCCAAAGATCTGAACACGTCTACTAAACGATTAACTCCTTAATTGTGTtccattgtgtgtgtaaaatgaggattaaatcagattttagcaacagtgaaaatgtctgaTACCCACCATGTTGGATCTGGTTAGCCGAAGAGAGCCTGAAAGAGCTCCACCGGAAGTTTAAAGCACAGACCGGAAACACTATCAGGGAGGCACTGCCACCTTCTGACATGGAGAATGTGcatatttttaattcaaatgagCCTCTTAGTTACTAGCGCTAATGTTATATCCACTACATACTTGGAGAAGGGGTTCTTTAAGGATTGCTTGCAGGATTGTGTCCCCCTTAGTGACACATTTTCTCTAATTACCACTCAGTTCTGTTAATTTCCTACTGAACCTAGTTCTCCTCAGAGCTAAATGAGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179305 lncRNA upstream 90093 19226649 ~ 19227893 (+) True G151395
TU179021 lncRNA upstream 207013 19109843 ~ 19110973 (+) True G151134
TU178969 lncRNA upstream 320054 18955049 ~ 18997932 (+) True G151084
TU178978 lncRNA upstream 372044 18945275 ~ 18945942 (+) True G151093
TU178948 lncRNA upstream 521747 18747827 ~ 18796239 (+) False nfat5a
TU179341 lncRNA downstream 713 19393874 ~ 19397489 (+) True G151419
TU179343 lncRNA downstream 5117 19398278 ~ 19400388 (+) True G151421
TU179369 lncRNA downstream 10148 19403309 ~ 19403657 (+) True G151445
TU179371 lncRNA downstream 10811 19403972 ~ 19404398 (+) True G151447
TU179370 lncRNA downstream 13445 19406606 ~ 19407326 (+) True G151446
XM_034307581.1 mRNA upstream 25876 19285785 ~ 19292110 (+) False chid1
XM_034307580.1 mRNA upstream 25876 19285786 ~ 19292110 (+) True chid1
XM_034307582.1 mRNA upstream 25876 19286117 ~ 19292110 (+) False chid1
XM_034307053.1 mRNA upstream 37404 19269694 ~ 19280582 (+) True thoc5
XM_034307054.1 mRNA upstream 37404 19269809 ~ 19280582 (+) False thoc5
XM_026918692.2 mRNA downstream 38265 19431426 ~ 19446347 (+) True mov10l1
XM_034307526.1 mRNA downstream 56382 19449543 ~ 19451833 (+) True szl
XM_034307522.1 mRNA downstream 63588 19456749 ~ 19464228 (+) True dbx2
XM_026919870.2 mRNA downstream 63588 19456749 ~ 19464228 (+) False dbx2
XM_026919713.2 mRNA downstream 82357 19475518 ~ 19542669 (+) True nell2a
TU179313 other upstream 54093 19260624 ~ 19263893 (+) True G151401
TU179056 other upstream 192854 19121164 ~ 19125132 (+) False faap24
XR_004578793.1 other upstream 240118 19076595 ~ 19077868 (+) True LOC117598072
TU178953 other upstream 593300 18721595 ~ 18724686 (+) True urahb
XR_004578809.1 other upstream 634558 18675010 ~ 18683428 (+) False rfwd3
TU181223 other downstream 2659453 22052614 ~ 22058158 (+) True LOC113529593
TU181225 other downstream 2659453 22052614 ~ 22058158 (+) False LOC113529593
TU181233 other downstream 2683710 22076871 ~ 22078453 (+) False arpp19b
TU181234 other downstream 2683710 22076871 ~ 22078453 (+) False arpp19b
TU181281 other downstream 2823114 22216275 ~ 22266382 (+) True G153014

Expression Profile