RNA id: TU181225


Basic Information

Item Value
RNA id TU181225
length 1594
RNA type TUCP
GC content 0.40
exon number 5
gene id LOC113529593
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 22052614 ~ 22058158 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGCAGCAGGGGTGAGACTGGGCGAGAGCAGAGGAGAGATGGCATGAGAAATCTTTGTCCTGAATGGGCTGTGTGTGCAGCGGACTTTTACCTCCTCTCGCCTAAAAACATCAACAGACACTGTAAACACTGGTtttgttttttctgtttctggtCAGCGTTAAAGCGAGATGAAATACTCATTTGGACTTTTCGTGGTAATCTCTTTGCTGACCGTCAGCGTCTGCAATAAGCATTATGGAATGCACTACTCCTCATTAGGCGCGTCTCTGCGCTGCTATAAGTGCTCGGACTACTACGGTGGCCGGTGTGGAAATGTCCAGGAGTGCACTTATGAAGACTCCTGTTTGTCTCTGCATGAGAAAGGAGGAAAAACGATCCGGCAGTGCATCAGGTACACGGACTGTGACAACTCCCGGCTGACCCAGATGTTTCCAGCAGTGTCTGGATTTACGTACCGCTGCTGTAACTCTAACTTATGTAACAGCGGGCACAGGGACACGGCCATCCTCAGCCTGTTCATCTCTCTGCTCAGCGTGTggtggagctgctgctgctaatCTTCTCACTCTATCACAGAATTTTTACTGTTCTTACATACAGTAATGGTAATAGAATGTGTATCGTAATTTTAACTTGTTCTTTATATTAACAACAAtcttaatatgttttaatacagATAAACCCATTTTCTGAATgctaatgactgttttttttttcatgtttttaattgaACTTGCTCGTTGTTGGATAGTGATGGAAATAACCATTAAAAGCTCTTAATGAAATTGAGGCCTAAATATCTTGTCTAAAAATATTGTCTGTTGTGGCTAATTGTGTTTGATGAGttatgtgtatttttgcatttcacACCTGGTTAATTGGGCATGTTACTTCTATTCGCTCTTGGTGTGTGTACTTTTGACAGacttgtgtttatttatcttCTAATCTTTTTCAGCTAGTGCTAGCTAGAGGCTAACAGGTGTTGTTGGTGTCATAAGAATAACTTTCACTAGAGACACATCCCTGCCAATTTTTGAAAGTTTAGTCCATCAGAAAAAAGATTCTTTGTTACTATttttatttgtataattttttccTTACAATATACATAGTCACAAAGAATCTTCACCGAAGATTTTAGACATGCAGCATTTAATatccataaaacaaaacatagttGCAGAGAGTCATTTTCAACAGGTTTTAATGTGAGATACaggtgtgtcatcagcataaaaaTTATAGGAGATTTTATGAAAGATAGACCCGAGGGAAGCATGTACAAAGAAAACAGCATATGGCCCAAGATGGAGCCCTGAGGTACACCACTGGTGATTGCTACTAAAGAAGGAGCCAATCTTCACAGAAAATGTCCTGTCTTTGAGGTATGAGGTAAACCACTTTAGAGCAGCCCCCTGGATCCCAACACCACATTTAATCTGTTCCAGATTGCATAATCCACTGTATCGAAAGGTGTGTTTTTCAGAATCTACAGTTCAATTTAGACTGTGTTAATGGAGCAATTGCCAAGTCCAATTCCTTGTAAGTGAAGTCTAACTTGACCAATaaaattgtttctgattctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181081 lncRNA upstream 241015 21810911 ~ 21811599 (+) True G152838
TU180895 lncRNA upstream 427950 21624450 ~ 21624664 (+) True G152736
TU180519 lncRNA upstream 927319 21122929 ~ 21125295 (+) True G152403
TU180520 lncRNA upstream 929778 21122322 ~ 21122836 (+) True G152404
TU180504 lncRNA upstream 989555 21059032 ~ 21063059 (+) True G152391
TU181250 lncRNA downstream 99709 22157867 ~ 22158096 (+) True G152984
TU181251 lncRNA downstream 100274 22158432 ~ 22158654 (+) True G152985
TU181253 lncRNA downstream 102500 22160658 ~ 22160872 (+) True G152987
TU181279 lncRNA downstream 157096 22215254 ~ 22215502 (+) True G153013
TU181295 lncRNA downstream 172147 22230305 ~ 22231430 (+) True G153026
XM_026919521.2 mRNA upstream 5285 22035251 ~ 22047329 (+) True prdm11
XM_026919522.2 mRNA upstream 5285 22035251 ~ 22047329 (+) False prdm11
XM_026919951.2 mRNA upstream 18223 22004622 ~ 22034391 (+) True phf21ab
XM_026919569.2 mRNA downstream 12488 22070646 ~ 22074010 (+) True bet1l
XM_026919486.2 mRNA downstream 18691 22076849 ~ 22078496 (+) False arpp19b
XM_026919485.2 mRNA downstream 18698 22076856 ~ 22078496 (+) True arpp19b
XM_026918851.2 mRNA downstream 23761 22081919 ~ 22107193 (+) True myo5ab
XM_034307285.1 mRNA downstream 23761 22081919 ~ 22105604 (+) False myo5ab
XR_004578759.1 other upstream 2667710 19349618 ~ 19384904 (+) False srpk2
TU179313 other upstream 2788721 19260624 ~ 19263893 (+) True G151401
TU179056 other upstream 2927482 19121164 ~ 19125132 (+) False faap24
XR_004578793.1 other upstream 2974746 19076595 ~ 19077868 (+) True LOC117598072
TU178953 other upstream 3327928 18721595 ~ 18724686 (+) True urahb
TU181233 other downstream 18713 22076871 ~ 22078453 (+) False arpp19b
TU181234 other downstream 18713 22076871 ~ 22078453 (+) False arpp19b
TU181281 other downstream 158117 22216275 ~ 22266382 (+) True G153014
XR_004578680.1 other downstream 2291610 24349768 ~ 24365372 (+) False LOC113530000
XR_004578829.1 other downstream 2356747 24414905 ~ 24435079 (+) False fcsk

Expression Profile