RNA id: XM_026909875.2


Basic Information

Item Value
RNA id XM_026909875.2
length 4818
RNA type mRNA
GC content 0.41
exon number 9
gene id khdrbs3
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3702496 ~ 3816623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGGAGCTGGACGCTTCCCGGTGTGGCGGCTCTGTGAGGCGGATGGATGAAGCCGAATCTCCGGGACATTCTCCACCTCCGGCTCCTTCATTAACACACCATTAACACACCATTAACACACTTCCGGTGATGTGGAGCGCTTAGCTGGTCCTCAGAGCtgcttcttgtgtgtgtgtgtgagtgtgtgagtgtgtgttctctctctgaggcttggtgtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgacacgcTGCTCACACAGCGCTCCGCGGACAGGacagaaattataaataattaaagaaataaaagaataataatactaatgatGGATAATGAAAAGTATCTGCCGGAGCTGATGGCTGAGAAGGATTCCCTCGACCCGTCTTTCCAGCACTCCACACGCCTCTTAGAGCAAGAAATTGAAAAGATTCAGAAAGGCGAAGAGAAAGAGGACGAGAAGTTCATCGACGTCGTAATAAACAAGAACATGAAACTGggtcagaaagtgctgattcCTGTCAAACAGTTCCCCAAATTTAATTTTGTGGGAAAGCTGCTCGGTCCACGAGGGAACTCACTAAAGAGACTACAGGAGGATACACTCACCAAAATGTCCATCCTTGGCAAGGGCTCcatgagagacaaagagaagGAGGAGGAGTTGCGGAAGAGCGGCGAGGCCAAATATCATCACCTGAACGAAGACCTGCACGTCCTCATCGAGGTGTTTGCTCCGCCCGCTGAGGCCTACGCCCGCATGGGCCACGCCCTCGAAGAGATCAAAAAATTCCTCATTCCGgATTATAATGATGAGATCAGACAAGCTCAGCTGCAGGAGTTGACGTTTCTGAACGGCGGCTCAGAGGATGCCAAGGTGCCCGCGGTGAGAGGGAAATCCAGCTCGAGGGCCCGCGGCACACCTGCTCCCGGCTCAcacagGAGTAGAGGAGGTGTTCCTCCACCCCAGGCTGCGGTTCCTCGAGGAGCAGCACCCAGAGGAGCTCCACCAAGCAGGCTTCCATCCAACAGGGGGAGAGCACAGAGAGGCCGTGGAGCTCCGCCCCCTGTGGGATACAGACCGCCGCCCCCTGTAGTGCAGGACTCGTACGGAGAATACGAATACGATGACGGATACGGAACAGCCTACGACGACCAAGGGTACGACTCATACGACAACACTTACAGTAACCAAGGACAAaactcagAGGACTATTATGAATATGGACATGGTCTAAGCGGGGAATCCTATGACTCATACGgCCAGGAAAAGTGGACAAATGGCCGCAACAAAGCTCCATCAGCGAGGACAAACAAAGGAGTGTACAGAGACCAACCTTATACACGATACTGAACTCTAAAGTCAGCCACGCCCGCCCATGCATTTCCAAGTAATGGATTTTATATGGACTTCCcccattctttttcatttttttttttttcagaataaaatCAACCAAAACTCCGAAAAAACAAAGCATCCCAGAGAGGAAGGGGAAGACGGGAACATGATTTCATGGGGACATTCAGTTTGACACTGGTAGATACTGGTTGTTGCATGGATGCAAGATAATTAAACCTGTGATCACTAATTATGTGTAAcataatcaaccaatcagaatccttCTATGCCAGTATTGAGAAGTTAGGGGGTGGGTGCTAGTTGGTAGAAGGTGGTGTAAACTTCAGGTGTTAGGTATTTAGATTTAGTCAGGTACATTTCTATATACACTTTTTGATGAGTGATCAACTTCAGTGTGTCCCTTGTAAATTCTacttaaagaaacaaacaaagaaaaaaaaattattgatacACATATCGTgttacttcttttttttgtaatgcaaTGTTCCTTAGCATTAAAGGGCTTATGGGAGCATTTAAACATTGTACATAATCATTTATCATGGTGAAGAAAGGTCACATTGCTCTGTCCAATATTCTTGTTAAATGATTGACCCTATAAGTGGTCGGACGCAGAGTTGCCAACCATCTGCAAATTTACACATAACTTCCGTGACACGAGTCAGGAATATGAGCTTATCCATTACGATTCTTTAGACCAAACTGCATAGCAATAAGAAAACAGAGGAAACTGATCAATAATGGAAAGTATGCAAATAAAGTGTCTGACTAGAGAAATTTGAGCCAGTGCAACTCCAGGCTCTCTTCTTTACAAAGATACTTGAAGTAAGTCTAATACCAGAGGTTAGCAtagttctttttctttttagattttGCATCATATAGCATAATCTACAACAAAATAGCAAAGTAGCTCATTTTAGTAAAAGCAAATGTGATAGAAGTAGGTCAAAGCTTTACCcaagcattttattttcagagtGCAAAGGTCCCAAAGTCACACCCACCTCAAATTATAAAGTCAACCCAAATGTGTTAGGTTTAGGTCCTAAGGTGCTAGTTAAAATCATGACAAAAATGATGACAATGGAATATATTAGATTGTATATATTACTAATAGAGGAAGCACTAAAATGATGCAGATTGGTTGGCAGCCCTAATccatttaaacacaattttaaaagtaaGAGATTGAGATTGTTTCCTTCTGAGGAACCTACGTTGCTTGCAGAAGTATTCCAGCCCCAAGAACCTTGTCAAATTTGGCACTCCAGTATATTCATAACCCCTTTTCGGGAAAATATATATTCACGCAACATTTACATGGCCAGACTGAAGCCGTATGAGTTGTGTACCTCTCTTCATGACAGATTTCATCCAGACTTCATATGCTCGGTAGAGCTGAGGCCAGAATGATGGCAAGAACTCTtagtgacattttctttttaacattcATGCCCCTGCAATGAAGCTTTGGCCTGTGTTATCCTAATGAAAGGCGGCTGTTCATCCTATCTttaatttttgcttttaatCCTGAATAGTTACTTGTGGAGTTCCCCCTGATATCTGGTGTTGCCTCCTCCATTTTGAGGTTTATAGAAGCCGAAGAACAAGTGAAGGACATTGTTCAACAAGGCATCACTGATTCACACATTCCCCACTGGTGTTCTCAAACCCTGCTGGCCCAAAAGTTGTGTTGTGAAGGCACTTGCTTTGTCTTGTGTTAATGCAATCTTGTTGTCAATTTGATTCAACAATCTTCTCCTGCTGCtggtggttgtggtggtttTACTGCAATTCAATCTTCTTGATGTAGAAGATAAACTGACCAAGTGGGTCCATCACTGCTTTTGTAACACCCTATGAGTCATATGCTTATTGGATAATGCTGCTAGGATTGAAAAATTCCCCATGCCATAATTCACTAATCAAGAAATAGCAAAACCCTCTTCCATTACACCAAACACACCTCATCCAGCTCATCAGTTGATCCATGCTTCATGAACTTGATAAGATATGATGTGGGCTTTTGGAAAGTTTTAAATGGTGCAGTTGTGACTCAGCATTTAGGGTTCTGAACTACTGATCTGAAGGAGTCTAAATCCAAGCAGAGCTACCACTATTGGTATCTTGTGTAAGGCCACTAACCCTCGCTTTGTTCCTTTGGATAAAACcatctgcaaaataaataaatgtaaatttatatatagCTCAGTAGATGCTCAGTCCTGGGGCTACCTGACTGATCATTGGCTTCCCTGCAGACAAATCATGGCATTTCTTAAATATTCCAGACTTTGATTGCCTCTGGGAGCCTGGGTTTAGCCTCAGgctaaaaaaatgacattcctTTTAGcctaaaatgaatttatttggcATTGTACTATGCACACAGTGAGGCCATGTTAACCCAGAAGGGGTAGAGACTGTGAAGACTACTTAtctataaaactaaaaatggGTCCTGCAATTTGTAGGCCTTCCATGATGGCCTAACATTTGACTGCCAAAGTGTATTTGGGCCTGAAGCAATGTTTGTGCATCTGCGTAGGAGTATTGGAATTTACAAGTCACTCTTTCACTCGCGCTGAATAGAACTATTCCCCATTTGAAGTGGAGCGTCTAGCGGTAACTGCTGTTTCGTACCTTGCGGGAAAAGCATTTTGTCTTAGTGATTGATTAGTGCTCTTAATACCACAGgtctgttgaattctggattcttaTTGGTCaaaagttgttgattaattttctctaacagtaaactctggcagtagtgcagctgtaaatgacaggtttactgtatattaatgtgctcattctaatatgctatTGTGGGAcgtgtatggtggatgctccacatacacTATGTGGCAGTTACAATGgggtttaataggagaaaaaattatcctattaaaaaaaatctgaaatagaaTTGATAATAGTCAGACTCCTAacaacaaaagagcaagagccaatcaatatcatattaatgagaaataaactaaaaacgtcaactcagaatttcattctaaaaataatttgaagATCAcaagttaattataaagattaatatgcaagtcattcagggtggatttctCCTTTACTTCTGTATAGGTTTTATGACCATTTGCATTGATATCCATGGGGCTAAATACTTTTGCAAGCATGTTAATAAAGAAAACTACATAaacttaattaataattcatactTTAATCTTAAAACTCCAGTGAGCTCCAGTAGTAGGTTCAGGTAGGATTTTCTTTTCCTAAATTTGAAATTCACTGTATTATATGAATGTTGTTTGTGTGTCCCTTGTACCTTAAAGTTTAAAGTGACTCAAATCTTAAATCCACTgctggctatttttttttttttctgaatactTTCTGTTTTGTAGTATAATCTGAAGCTTGTGTAAGCCCTTTAATCTATTTCTTGGtt

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14942 KHDRBS3, SLM2; KH domain-containing, RNA-binding, signal transduction-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169297 lncRNA upstream 78208 3617176 ~ 3624288 (+) False G142908
TU169296 lncRNA upstream 81834 3617176 ~ 3620662 (+) True G142908
TU168847 lncRNA upstream 266931 3415522 ~ 3435565 (+) False G142575
TU168845 lncRNA upstream 266931 3431123 ~ 3435565 (+) True G142575
TU168842 lncRNA upstream 268447 3415522 ~ 3434049 (+) False G142575
TU169408 lncRNA downstream 109436 3926059 ~ 3933020 (+) True G142999
TU169457 lncRNA downstream 251735 4068358 ~ 4069576 (+) True G143048
TU169540 lncRNA downstream 309967 4126590 ~ 4126795 (+) True G143125
TU169600 lncRNA downstream 437809 4254432 ~ 4254668 (+) True G143185
TU169601 lncRNA downstream 438101 4254724 ~ 4254951 (+) True G143186
XM_034307220.1 mRNA upstream 306460 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA upstream 306460 3388263 ~ 3396036 (+) False LOC113523845
XM_026909905.2 mRNA upstream 333949 3362400 ~ 3368547 (+) True rps5
XM_034307426.1 mRNA upstream 345853 3346572 ~ 3356643 (+) True ppt2b
XM_026909884.2 mRNA upstream 394172 3293799 ~ 3308324 (+) True cratb
XM_034307337.1 mRNA downstream 193296 4009919 ~ 4046648 (+) True LOC113523835
XM_034307648.1 mRNA downstream 651499 4468122 ~ 4479494 (+) True rragcb
XM_026947326.2 mRNA downstream 668210 4484833 ~ 4508842 (+) True fhl3b
XM_026947325.2 mRNA downstream 708992 4525615 ~ 4530986 (+) False stpg1
XM_034307695.1 mRNA downstream 709346 4525969 ~ 4530986 (+) True stpg1
TU168849 other upstream 240325 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 306429 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 334158 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 336238 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 338148 3364215 ~ 3364348 (+) True LOC113523857
TU169682 other downstream 668220 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 668260 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 1924335 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 2770588 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 2963366 6779989 ~ 6798904 (+) False G144353

Expression Profile