Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026909905.2 |
| length | 794 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 6 |
| gene id | rps5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 3362400 ~ 3368547 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0015935 | small ribosomal subunit | cellular_component |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02989 | RP-S5e, RPS5; small subunit ribosomal protein S5e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU168808 | lncRNA | upstream | 10281 | 3283128 ~ 3352119 (+) | True | G142545 |
| TU168817 | lncRNA | upstream | 41232 | 3312761 ~ 3321168 (+) | True | G142553 |
| TU168782 | lncRNA | upstream | 132100 | 3229306 ~ 3230300 (+) | True | G142524 |
| TU168783 | lncRNA | upstream | 146614 | 3204461 ~ 3215786 (+) | False | LOC117598172 |
| XR_004578864.1 | lncRNA | upstream | 146623 | 3211363 ~ 3215777 (+) | True | LOC117598172 |
| TU168839 | lncRNA | downstream | 11174 | 3379721 ~ 3381739 (+) | True | G142573 |
| TU168855 | lncRNA | downstream | 22358 | 3390905 ~ 3391147 (+) | True | G142580 |
| TU168854 | lncRNA | downstream | 25225 | 3393772 ~ 3396067 (+) | False | LOC113523845 |
| TU168850 | lncRNA | downstream | 29123 | 3397670 ~ 3400823 (+) | True | G142576 |
| TU168842 | lncRNA | downstream | 46975 | 3415522 ~ 3434049 (+) | False | G142575 |
| XM_034307426.1 | mRNA | upstream | 5757 | 3346572 ~ 3356643 (+) | True | ppt2b |
| XM_026909884.2 | mRNA | upstream | 54076 | 3293799 ~ 3308324 (+) | True | cratb |
| XM_034307287.1 | mRNA | upstream | 208554 | 3146038 ~ 3153846 (+) | True | slc39a7 |
| XM_026909916.2 | mRNA | upstream | 238686 | 3118288 ~ 3123714 (+) | True | rps18 |
| XM_026909910.2 | mRNA | upstream | 301063 | 3055623 ~ 3061337 (+) | True | LOC113523850 |
| XM_034307220.1 | mRNA | downstream | 15633 | 3384180 ~ 3396036 (+) | False | LOC113523845 |
| XM_026909906.2 | mRNA | downstream | 19716 | 3388263 ~ 3396036 (+) | False | LOC113523845 |
| XM_026909875.2 | mRNA | downstream | 333949 | 3702496 ~ 3816623 (+) | True | khdrbs3 |
| XM_026909876.2 | mRNA | downstream | 333949 | 3702496 ~ 3816623 (+) | False | khdrbs3 |
| XM_026909877.2 | mRNA | downstream | 383420 | 3751967 ~ 3816623 (+) | False | khdrbs3 |
| trnac-gca_12 | other | upstream | 101455 | 3260874 ~ 3260945 (+) | True | trnac-gca_12 |
| trnac-gca_11 | other | upstream | 101988 | 3260341 ~ 3260412 (+) | True | trnac-gca_11 |
| trnac-gca_10 | other | upstream | 102521 | 3259808 ~ 3259879 (+) | True | trnac-gca_10 |
| trnac-gca_9 | other | upstream | 103139 | 3259190 ~ 3259261 (+) | True | trnac-gca_9 |
| trnac-gca_8 | other | upstream | 104885 | 3257444 ~ 3257515 (+) | True | trnac-gca_8 |
| TU168853 | other | downstream | 19706 | 3388253 ~ 3396067 (+) | True | LOC113523845 |
| TU168849 | other | downstream | 29123 | 3397670 ~ 3462171 (+) | False | G142576 |
| TU169682 | other | downstream | 1116296 | 4484843 ~ 4505055 (+) | False | fhl3b |
| TU169683 | other | downstream | 1116336 | 4484883 ~ 4505055 (+) | False | fhl3b |
| TU170101 | other | downstream | 2372411 | 5740958 ~ 5747944 (+) | False | gpx3 |
