RNA id: XM_026909931.2


Basic Information

Item Value
RNA id XM_026909931.2
length 1363
RNA type mRNA
GC content 0.37
exon number 3
gene id LOC113523877
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1496473 ~ 1505004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGCGGTAAGTAGACGCCCACATGGTTCACGGGTTAAAGTGCTGATTCTCGAGGCACTCGGCTCACTTGCACACCTCGGAGAAAGAGAGCGGTTTGGAAACAGAGAGCAGTGAGtgTTGCTTTGCAGAAATGGCAGAAATTGAAGAGATTGTTGAAGGAGTTGAAGAAGCGATAGAAGGAGCAGAAGAAGGAATTGAGGAATTATCAGAAGAAGTACAAGAGGAAATTCAAGCTGAAATAGCTGAAACCCGCACTGTGATCGAAGAGCTTACTACAACAGAGAGTAAACTCAGAGGTATCCTCAAGTCCCTCGGAAGTTGTGTATCTGACATAGCCAAGTTTACTTTCAAAAATATAGCGATTGGCGCCATCCTGTGGGGGGTAAATGTTGCTTTAAACAAGCTGCTTCCACAAGGACATCAACAGGAAACCAAGACGAAAATTCGTAATGTAATAAAGGCTTTGAGTGATGTGATCAATGCTGAAGCCGCGATAAACCAGAAGACACTGGAGTGGATGAAGGCCCACGAGAATGATAAAATCACTCTGGATGGAATTGAAGTGCCAATGGAAGCCATTCTGACAAAATACATGAAGCCATTAGTTGAGGCAACTGATAAATCCAAAACCATTGCTGAAACCCTTCAAGAAAAAGTGGACGggaaaattcagtttaaatgtCCAACCGCAGACGACATGAGAAAATTCATGGAAGTTACCGAAGTGTTCATCAAAGCCTTCACCGATCTCATCGTGTTCATTCTGAAACATGAAGACCAGGTTAAGGTGCTGCAGAGCTTTCCGGTAAAAGAGGGAGATCTTGTTGACCTAACAGCCAAGCTTAACGTCGCCAAGGACTTACCTCTGTGGTAAAATAAATTGTGACTTGATAACAACAGTAATCAGAAATGGCTGTTTAATCAGAAATGAGTTTTTTAAGCATACGTTTGGCTAATTCAACAGTTGTATCTACTGAATTTATAGAATATAGCATGTAAAACAATATCAAATTCACATCTTCTTTGAATTTATTTACTTGGTTGcattttttataacaattatataCAAAAAGATCAATAATTTCTGATTTCTTTTAATGAATTAACTTTCATTGTCTTTATATAAGTTACTAATCTGTATTTTTGGATGAGGAACATCTTTCTTTATCAaataaacaaaggcaaagtTTTGTTATCATACAAGTTTTAACATGTAATGTTGTAAAACTACTGTTTAAAGCAGTCTCAttatgaatcagtgaatgttgTCCATTTCCTGATCAAAGAACTGCAGCCTGAATCTCcaatctccatttttttttttcatttgtatctgcatccattaattcattaaaaaaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168052 lncRNA upstream 13826 1480710 ~ 1482647 (+) True G142062
TU168048 lncRNA upstream 17834 1476980 ~ 1478639 (+) True G142058
TU167851 lncRNA upstream 176914 1313581 ~ 1319559 (+) True G141930
TU167733 lncRNA upstream 279048 1216278 ~ 1217425 (+) False LOC117598140
XR_004578843.1 lncRNA upstream 279049 1216269 ~ 1217424 (+) True LOC117598140
TU168071 lncRNA downstream 4979 1509983 ~ 1515675 (+) True G142074
TU168085 lncRNA downstream 53886 1558890 ~ 1559891 (+) False dus3l
TU168112 lncRNA downstream 157084 1662088 ~ 1687665 (+) True G142097
TU168031 lncRNA downstream 198258 1703262 ~ 1787697 (+) False G142051
TU168027 lncRNA downstream 198624 1703628 ~ 1795550 (+) False G142051
XM_026909968.2 mRNA upstream 23393 1462445 ~ 1473080 (+) True LOC113523903
XM_026911544.2 mRNA upstream 1052025 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 1166489 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 1363066 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 1369135 115546 ~ 127338 (+) True fabp10b
XM_026909950.2 mRNA downstream 29863 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 33155 1538159 ~ 1540467 (+) True LOC113523893
XM_034307388.1 mRNA downstream 43253 1548257 ~ 1559910 (+) True dus3l
XM_026909918.2 mRNA downstream 85854 1590858 ~ 1597758 (+) True LOC113523867
XM_034307389.1 mRNA downstream 110139 1615143 ~ 1622790 (+) True LOC113523891
TU167713 other upstream 324129 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 393210 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 414994 1026987 ~ 1081479 (+) True LOC117598117
TU167711 other upstream 435209 1010669 ~ 1061264 (+) False G141825
TU168100 other downstream 106507 1611511 ~ 1613336 (+) True G142093
TU168103 other downstream 110174 1615178 ~ 1620661 (+) False LOC113523891
TU168470 other downstream 610036 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 765046 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 765446 2270450 ~ 2271586 (+) False LOC117597926

Expression Profile