RNA id: XM_026911309.2


Basic Information

Item Value
RNA id XM_026911309.2
length 2109
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113524921
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1973532 ~ 1998149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAACTTCAGTCGGTTCATACAGTGTAAAGTTTGCTTTGTTTCGTCTTTAACTTTTACACTGTCACGATGGAGCATCTTGGGTTCATCTGTCTCCTGCTGTGTGTAAGCATACACACAGCCAACAGCGTGAAAAAATCTTGTCGAGAGAAAAACATCTGCGTCCTTAAATGTGGCAAAGAGACGAATGGCAACGTGACCTGGAGCAGAGATGTAGATGGAAAAAGGGAGAAGATTCTTACCATCTACAAGGAAACGGTTATCAAACACATCACTGATTCAGACAAACGTTACCGCTCAGGAGCAGGTCTGATTCTGAGTATATTTGGATTCTCACCTTCAGACGCTGGGCGATATTACTGCAATGAGAACACTGTGGAGCTCAGTGTGATGTCAAAGACTGAAATAATCTCTCAAGAGCGGACTAGGACTGGTGAGTTGTTGCTCGCAGCTGCAGTAGCCGGGGGCTGTGTGCTCGCTTTAGCATCGGTTCTGGTTATGTGGAAATGTTTCTCCAAAAGGAAAGGTAGCACAGCCAAGACAGAGGAAGATTCGGCTGAAAAAGCAGGTTCTTTGGATACGATACACATCTATGAGTCTATTTATGAGACTCCATCAGCTCCACAACCAGGTAACCAGCAGATCCCAAAAGATGGCATTTACTATCTGGCTTCACATTCAGGAATCCAGATCACACGTTAACATACacaaaatgtcctttttttattttcaatttcattggtttacttttttttttgggttgatagacagacagacagacagacagacagatagagagatagataggtTGGAACTTTATTGATCCTGATGGAAATTTCAGTGTTACAGTGGTAAAAGTGGTAAAAGACAAAGATTCACAGATAaccataaatacaataaaatagcacagtgcaaaaaataaaataaaataaaataaaaatccaggtgagggagggagggatttGTCTCTATACAAAAGATAAGTATAAACAAACAAGGCACTTAGATATTGTTCATGTGTGAAAGAAAGTGGGGAGGTGCCAGTTAAAAGGTGCCATGAGGTAgttctactactactgttactgctaataataataataataataatagcaacagcagcaacacaGGCTCAGCTGCTAGTGCTAACATTATAAATAGTAATGGACTCCTATAACAAAGCTGGCCTTCCTAATCAGTTTGTTAAGGTTCTTTGTGGCCTTCGCACCAATACCATTTCCCCAGCACACAACAGCATACAACAAAATAGAAAAGTGGAGGAACTCACTTCCTCCATATGCTCTCTATCAATGGTGACGGGTGATAGGTGGAGCCTGGACCTCCTGAAGTCCACcaccatctctttttttcttgccaaTGTTTGGCTGCAGTTTGCACCACTCAGCAAAGTTCTCCAGCAAGGCCCTGTACACATCCTCCTGCCCACCTCTGATGCATGAACTTCTGCACTTGACATGACTCTGTGTTATACCTAAGATCTGAGGTGTACAGACTGAACAGGAAGGGAGCCAGTACAGTCCCTTGAGAAGCCCCAGTACTGCACATAGCCGTATCTGACTCACCAGTTAGGTAGTCCATTATCCATGAGATGATGGATTCATCCACCTGCATCACCCATAGTTTCCTCCCCAACAGTTCACGCTGtatggggcagtcgtggcctaatggttagagagttggacttgtaACCCAACGGTTGTGGaatcgagtctcaggtccggcaaggatcgtaggtggggggagtgcatgaccagcgctctcttccaccctcaataccacgactgaggtgagacacttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaaggctgcccactgctccgggtgtgtgttcactactatgggtcaccatactcaGCTCTGACCAGTGGTTGAAGCTGAGCTAATATCAGTCTTTCCAGGGTCTTCATTATATGTGATGTTAAGGCCACTGGTTGAAAGTTGTTTAGGACATTTGTTTGCCTGTTCTTGGGCATTGGGACCACACATCAAGTTTTCGATTTGACAGGAACTGTTTCCTGTTGACTGTTGACTAATTATGGCCAAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168193 lncRNA upstream 23185 1947881 ~ 1950347 (+) True G142164
TU168186 lncRNA upstream 69098 1903163 ~ 1904434 (+) True G142157
TU168162 lncRNA upstream 103023 1869549 ~ 1870509 (+) True G142134
TU168150 lncRNA upstream 117182 1851472 ~ 1856350 (+) True G142122
TU168042 lncRNA upstream 141047 1819530 ~ 1832485 (+) True G142054
XR_004578671.1 lncRNA downstream 20794 1999256 ~ 2003137 (+) True LOC117597929
XR_004578878.1 lncRNA downstream 40347 2018809 ~ 2022140 (+) True LOC117598183
TU168463 lncRNA downstream 73996 2052458 ~ 2052691 (+) True G142301
TU168464 lncRNA downstream 76537 2054999 ~ 2103929 (+) True G142302
TU168465 lncRNA downstream 77490 2055952 ~ 2083467 (+) False LOC113524920
XM_034307416.1 mRNA upstream 290739 1647724 ~ 1682793 (+) True slc44a4
XM_034307593.1 mRNA upstream 326983 1622766 ~ 1646549 (+) True ehmt2
XM_034307389.1 mRNA upstream 350742 1615143 ~ 1622790 (+) True LOC113523891
XM_026909918.2 mRNA upstream 375774 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 413622 1548257 ~ 1559910 (+) True dus3l
XM_034307709.1 mRNA downstream 27604 2006066 ~ 2025794 (+) False LOC113524922
XM_034307706.1 mRNA downstream 27643 2006105 ~ 2033649 (+) False LOC113524922
XM_034307708.1 mRNA downstream 37195 2015657 ~ 2025803 (+) False LOC113524922
XM_034307705.1 mRNA downstream 46318 2024780 ~ 2033649 (+) True LOC113524922
XM_034307707.1 mRNA downstream 46318 2024780 ~ 2033649 (+) False LOC113524922
TU168103 other upstream 352871 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 360196 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 801188 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 870269 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 892053 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 136578 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 291588 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 291988 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 300617 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 309636 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile