RNA id: XM_034307706.1


Basic Information

Item Value
RNA id XM_034307706.1
length 983
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC113524922
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2006066 ~ 2033649 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACACAAGACAGCAATGTGGGTTCTTGCTTTAACTGCTCTCCTGGTTTATGGCTCTGTACACACAGCTCACAGTGctATGACAAATAATAGAGGCACAGAGGGGGGTAACACTGCTCTCTTCTGTGAGAATAAGGGTAGTGTGATTTGGAGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAGAAGTCACCATTAAACACAAACCTGATCCAGATGACAGATACACTGTGTTAAGTGATTCATCACTCGTGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACGCTGTTCCTGTGGTCAGTCTGACTGTCACTCCATTACAAAGTATCACGACTGCAAGAGCCACGATGGAAAAAGATTCAGCCTCAGGCGAAAAAAACGAGGAGGATGATGacaatggtgatgatgatgatgatgaaacacCGTGGTGGTCAGTCGCTGCTGCAGTTGGAGTGAGCTCCCTGGTGGTGTTGCTGTTGGTTCTTTCAATATGGAGATTTTTCACTAAAAGGAGAACACATCTGCAAAACCAGGTGCAAGTGTATGACTCTGTTAACAACCTTCCAGCAGCCCCACAACCTGCAGGATTCAGTGTTACACACGTCTATGACTCCATTAACAATCTTCCAGAAGCCCCACAATGTGgtgatcagcagagagagagcgaggtcGTGTATTTCCTCGCACAAAACCCAACATCCAACACCACAGgcaatcaggagagagagaatgaggctGTATATTTCCTGGCAACAGACCCAACGTCCAACAGTGCAgACCAGGACCAAGTTGGACAGCTCTACGCCAAGATCaagccaaaaaataaaacctgaagTTTGtctttatatcattattatcattattaataatacgTACCCCTGCAGCtataattttctgtatttaGTTTGTAATAATTGGATGCCTGTACTGCTTTAATAAATTCATCTAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578671.1 lncRNA upstream 2968 1999256 ~ 2003137 (+) True LOC117597929
TU168193 lncRNA upstream 55758 1947881 ~ 1950347 (+) True G142164
TU168186 lncRNA upstream 101671 1903163 ~ 1904434 (+) True G142157
TU168162 lncRNA upstream 135596 1869549 ~ 1870509 (+) True G142134
TU168150 lncRNA upstream 149755 1851472 ~ 1856350 (+) True G142122
TU168463 lncRNA downstream 18809 2052458 ~ 2052691 (+) True G142301
TU168464 lncRNA downstream 21350 2054999 ~ 2103929 (+) True G142302
TU168465 lncRNA downstream 22303 2055952 ~ 2083467 (+) False LOC113524920
TU168455 lncRNA downstream 35589 2069238 ~ 2146073 (+) False LOC113545687
TU168467 lncRNA downstream 51136 2084785 ~ 2125396 (+) True G142305
XM_034307177.1 mRNA upstream 7956 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA upstream 7956 1973532 ~ 1998149 (+) False LOC113524921
XM_034307178.1 mRNA upstream 7956 1973532 ~ 1998149 (+) False LOC113524921
XM_034307180.1 mRNA upstream 7956 1973532 ~ 1998149 (+) False LOC113524921
XM_026911309.2 mRNA upstream 27643 1973532 ~ 1978462 (+) True LOC113524921
XM_034307576.1 mRNA downstream 3226 2036875 ~ 2053264 (+) False LOC113524923
XM_034307578.1 mRNA downstream 3226 2036875 ~ 2053264 (+) False LOC113524923
XM_034307577.1 mRNA downstream 3226 2036875 ~ 2053264 (+) False LOC113524923
XM_026911314.2 mRNA downstream 3226 2036875 ~ 2048015 (+) True LOC113524923
XM_034307391.1 mRNA downstream 21382 2055031 ~ 2085878 (+) True LOC113524920
TU168103 other upstream 385444 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 392769 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 833761 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 902842 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 924626 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 81391 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 236401 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 236801 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 245430 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 254449 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile