RNA id: XM_034307576.1


Basic Information

Item Value
RNA id XM_034307576.1
length 903
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC113524923
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2036875 ~ 2053264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTGGGTTCTCACTTTAACCACTCTCCTGCTCTGtatcactgcacacacagctgaaagtGGCTTGTCCATTCAGAGACGCACAGAGGGAAGTAACACCGTCCTCTCCTGTAAAAATGACAGTAATGTAACCTGGAGTAAAGGTGTTGGTGGACGGAGAGCAGACATCCTCACTGCTGAACATGATCCAGATCAGCGAATCATTTTATTAACTAATTTCTCACTCATGATAAAGAATCTGTCTGTGTCAGACTCGGGGATGTACTACCTTAACTCAGTTCCTGCAGTCAAGCTGACTGTGACCCCCATTAAAGTGACTGATGGCAAACCCACCACGGCTAAACGAACACACAGGAAGCCGAAGCGAGAACAGAagtCTACAAAGACGAAACGAGGACCAAAACATGACAGTGATGAAGATGACGATTCAAGTGAGAGAAAAGCACCAGAGAAACGCAGAAAACATGAAACTAAACAGAAGCTGGGAAAAACAGACAGTGATGAAGATGACGAttcaagtgagagaaaaacaccagAGAAACGCATAAAACATGAAACTGAACAGAAGCTGGGAAAAACAGAGTTCTCTGCTCTGGTGTTGGTTATCGCTGCCACGTTGGCCGGTGTTGGGCTCGTCATGTTATTGTGGAAAGGAAACTTCCGAACACAGTCTCCTGAACCTTGTGTCACAGAACATTATTACGAAACCATAGACAACATTGCACCAGCTACAACACCAGgcaGTGAGAAGCCATGCAAAACAATTTACGTCCTAGCAGACTATCCAGCAAAACTGAACCCAGAGAAGAAAAACCCAAGTGATGTTTCCTGTTCGACATCAGAGACACTGTGGAGGAAGAATCCGctacacatgctacttctgagatgccagtgatcctgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578878.1 lncRNA upstream 14735 2018809 ~ 2022140 (+) True LOC117598183
XR_004578671.1 lncRNA upstream 33738 1999256 ~ 2003137 (+) True LOC117597929
TU168193 lncRNA upstream 86528 1947881 ~ 1950347 (+) True G142164
TU168186 lncRNA upstream 132441 1903163 ~ 1904434 (+) True G142157
TU168162 lncRNA upstream 166366 1869549 ~ 1870509 (+) True G142134
TU168464 lncRNA downstream 1735 2054999 ~ 2103929 (+) True G142302
TU168465 lncRNA downstream 2688 2055952 ~ 2083467 (+) False LOC113524920
TU168455 lncRNA downstream 15974 2069238 ~ 2146073 (+) False LOC113545687
TU168467 lncRNA downstream 31521 2084785 ~ 2125396 (+) True G142305
XR_004578679.1 lncRNA downstream 167303 2220567 ~ 2226796 (+) True LOC113545551
XM_034307706.1 mRNA upstream 3226 2006105 ~ 2033649 (+) False LOC113524922
XM_034307705.1 mRNA upstream 3226 2024780 ~ 2033649 (+) True LOC113524922
XM_034307707.1 mRNA upstream 3226 2024780 ~ 2033649 (+) False LOC113524922
XM_026911312.2 mRNA upstream 3226 2024780 ~ 2033649 (+) False LOC113524922
XM_034307708.1 mRNA upstream 11072 2015657 ~ 2025803 (+) False LOC113524922
XM_034307391.1 mRNA downstream 1767 2055031 ~ 2085878 (+) True LOC113524920
XM_034307493.1 mRNA downstream 43715 2096979 ~ 2183053 (+) False LOC113545687
XM_034307502.1 mRNA downstream 43740 2097004 ~ 2183053 (+) False LOC113545687
XM_034307490.1 mRNA downstream 61776 2115040 ~ 2183053 (+) True LOC113545687
XM_034307492.1 mRNA downstream 61776 2115040 ~ 2183053 (+) False LOC113545687
TU168103 other upstream 416214 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 423539 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 864531 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 933612 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 955396 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 61776 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 216786 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 217186 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 225815 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 234834 2288098 ~ 2288639 (+) False LOC117598174