RNA id: XM_026911871.2


Basic Information

Item Value
RNA id XM_026911871.2
length 2561
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC113525374
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 102820 ~ 114936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caggagctTCTCAGCTTctcagaaaaatgaaatattaattaacggaagtaataaaatgtgttccGGATGAATGTTCCAAGTTTTTCTGTTTCTGCGCGCgtgatgtgtgtttgaatatatttatatttatattcattgcCTTGCGTTAACCCGGGAGGATCATGCGCGCGCTCCTGCACGCGCTCCTGCACGCGCTCACTTTGCTGTGTGTGCTCGGTTCTGTTTCCGGTTCGGTGCTGAACTCCTCGGTGACCGGTGAGTCCGCGCGCGCCTTCCCGGTGCTCACCGTGAGCTATGAGCGCGTGCGTAAACCGTTCGAGGTGTGTCTGTGGATCCTGCTGGCCTCCTTAATGAAGCTCGGGTTCCACATCATCCCTGGTTTTTCCCGATTTGTCTCTGAGAGCTGTGTGCTGATCATGGTTGGTCTGATGGTCGGATTTCTCATTAAGCTCTTGGGTGAAACACTTCCAGTTTTGGACACCGAGCTCTTCTTCCTGTGTCTACTCCCCCCCATCATCCTGGATGCTGGATATTTCCTGCCTCTGCGCCCCTTCagtgagaacatgggctccatcTTGGCACTGGCTGTGCTGGGAACGCTCTGGAACTCCGTCTTTGTTGGGGTGGTGTTATATGGCATGTGTAAAGTGATTGGCCAGATGGATGGAGTCAACCTGCTTTCCTGCTTGCTGTTTGGTTCCATCTGCTCTGCTGTGGATCCGGTTGCTGTCCTTGCTGTCTTTGAGGAAATTCACATTAATGAGCTCCTCCACATTTTGGTGTTTGGAGAGTCACTGCTTAATGATGCTGTTACTGTGGTATTGTATCACCTGTTGGAGGAGTTTGCTGCCAGAGAGACGGTGGAGTTCAGTGATGCACTACTGGGTGTGCTGAGCTTCCTGTTGGTAGCATTGGGGGGCATCATGGTGGGCATGGTTTATGGCATCATGGCGGCTGTCACCTCTCGCTTTACCTCACACTCACGTGTCATCGAGCCGCTTTTCGTCTTCCTCTACAGCTACCTGGCGTACCTGTCGGCTGAGGTGTTCCATCTGTCTGGCATCATGGctcttaTTGCATGTGGTGTGGTTATGCGGCCCTATGTGGAGGCCAACATTTCCCACAAGTCCTACACCACTATAAAGTACTTCCTTAAGATGTGGAGCAGCGTGAGTGAGACTCTCATCTTTGTCTTCCTTGGCGTTTCCACGATAGCAGGACCGCATCACTGGAACtttatcttcatcatcttcaccatcatcCTCTGCCTCATCTCCCGTGTACTGGgagtggtGGGACTGAGCTTCATCATGAATAAATTCCGCATGGTGAAGTTAACAGCTAAAGACCAGTTCATCGTGGCCTACGGTGGCCTACGGGGAGCCATCGCATTCTCACTGGCTTTCCTGCTCTCCAGTGAACACTTCCCCATGAAGAACATGTTCCTCACTTCCATCATTACACTCATCTTCTTCACAGTctttgttcagGGAATGACGATCCGCCCGCTGGTGGAGCTTCTGGCAGTAAAGAAGAAAAGCCACACCAAGTTTACaataaatgaggaaatacaTACACAGtTTCTTGACCAGGTGCTGATGGGAATCGAGTGTATCTGTGGTCATTATGGACATCTTCACTGGAAGGACAGGCTCACCCGGTTTAATAAGCGCTACATGAGGAAGTGGCTGATCTCAGGAGACAGGTCTGAGGAACCGCAGCTCATCTCCTTCTATAATAAACTGGAGAGGAAACAGGCACTCCTAGTGGCTGAGAGCAGAACTGCAGCCAGGTTAAAACCATCACTGCCCTCTACTGCATCCTTACTgagtGTTCGGAGTGAGAGGAAGAACATGATGAAAATCACAAAGGAACAAGAGGAGGCAATCCGGAACATTCTCAGAGCAAACctgcagaaaacacaacagaggatgCGCTCGTACAGcagacacacactgctgctggagGAAGAAGAGGTGGAGTGGCGTGAGTCTCAGCTCCAAAGACAGAGAGCACAGATGGAGCGAAGGATGAGTCACTATTTGACTGTTCCGGCTAAAAGACACTCCCCACCGGTCAGGAGAGCAAATTTAATCTTCAATAACCCGAGCAGTCCTGCAGTTAGTGACATCACCATCAGTACAGAGCCATGTTCTACTTCTACAGACACGGTGAAGCTACTGAATGAAACACAACCGAGACAAGACAGTGTCAGCAAAATCCGACACGGAGTCAAGAAAAACCAAGTCAACAAAACAAACGATTCAATCAACAAGAAACAGGATGACTCCCAGACGGACCGAGACAGAGCCTGTAAGATCCAAGATGGCTCCTGTGGAGGAAAAGACCGAAACCTGAGTGTAACATTTGGTCTGGACGTCGAGGAGCAGAAACCTCCTCAAAGTCTAACCAACCTGGAAGTGAGCAAAATtgaggaggaagatgaagatgacAATGCTTCTTGACATGATTGCATTGTGACAGGAGTCTAACAGCaccaatttaataaaaactagcaagtgagagaaaatattatttatttcaaatatattattacaata

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015385 sodium molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167360 lncRNA upstream 30244 64691 ~ 72576 (+) True G141558
TU167346 lncRNA upstream 57016 45246 ~ 45804 (+) True G141546
TU167333 lncRNA upstream 68531 33604 ~ 34289 (+) True G141533
TU167413 lncRNA downstream 21605 136541 ~ 139266 (+) True G141601
TU167437 lncRNA downstream 74893 189829 ~ 190245 (+) True G141625
TU167453 lncRNA downstream 88205 203141 ~ 203683 (+) True G141641
TU167454 lncRNA downstream 90695 205631 ~ 205865 (+) True G141642
TU167458 lncRNA downstream 92389 207325 ~ 217714 (+) False G141643
XM_026911872.2 mRNA upstream 13982 67609 ~ 88838 (+) True gpd1c
XM_034307532.1 mRNA downstream 610 115546 ~ 127338 (+) True fabp10b
XM_026911879.2 mRNA downstream 12772 127708 ~ 133407 (+) True LOC113525382
XM_026911543.2 mRNA downstream 209210 324146 ~ 329984 (+) True LOC113525100
XM_026911544.2 mRNA downstream 323091 438027 ~ 444448 (+) True LOC113525101
XM_026909968.2 mRNA downstream 1347509 1462445 ~ 1473080 (+) True LOC113523903
TU167368 other upstream 6760 93086 ~ 96060 (+) True G141566
TU167477 other downstream 98012 212948 ~ 235521 (+) True G141647
TU167690 other downstream 625913 740849 ~ 742201 (+) False G141823
TU167699 other downstream 652119 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 752733 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 827085 942021 ~ 979635 (+) True LOC117598144

Expression Profile