RNA id: XM_026911872.2


Basic Information

Item Value
RNA id XM_026911872.2
length 2125
RNA type mRNA
GC content 0.43
exon number 8
gene id gpd1c
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 67609 ~ 88838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccCCAGTGAGAGGCGTATAAGGaaggctaaacacacacacacacacacacacacaagttcattCAGGAAGTGACCCGCAGCACAGACACTGAGCAAATCAGGATGCCGGGGAAGAAAGTGTGTATTGTTGGATCTGGAAACTGgGGTTCAGCCATCTCACGCATCATTGGGCAGAATGTAAAGGCGTCCAATCGGTTTGCGCCAGTTGTTAACATGTGGGTGTTTGAGGAGATCATTAATGGGAGGAAATTGACCGACATCATCAACACGGAACACGAGAATGTCAAGTACCTCCCAGGACACAAACTGCCCAAGAACGTGATTGCTGTTCCTGACATTACAGAGGCTGTAGCTGGAGCAGATATCCTTGTCTTCGTTGTCCCTCATCAGTTTATTGGAAAACTCTGTGACCAGATGAAACTTCATGTTAAGCCAGGAGCCATCGGAATCTCACTCATTAAGgGAATAGATGAAGGTCCATCAGGTTTGACGTTGATCTCTGACATTATCAGAGGGAAGCTGGGGCTTGATGTGAGTGTGTTAATGGGAGCAAACATCGCTACTGAAGTTGCCGAGGAGAAATTCTGCGAGACCACCATtgGGGCAGTCAATGAATACAACGGTCAGGTGTTTAAGGAGCTGATGCAGACACCAAACTTCCGCATCACTGTGGTATCAGACAGCAACACTGTGGAGCTGTGTGGAGCACtgaagAATATTGTGGCAGTGGGAGCAGGATTCTGTGATGGTCTGGGTTTTGGTGATAACACTAAAGCAGCTGTGATTCGTCTGGGTCTGATGGAGATGGTGTCCTTCGCTAAGATCTTCTGCAGCACCTCTGTCAGTTCTGCTACGTTCCTGGAGAGCTGCGGCGTCGCTGATCTCATCACCACCTGCTACGGAGGACGCAACCGACGTGTTGCTGAAGCTTTTGTCACCTTGGGCAAGTCTATCGCTGAGCTGGAAGCTGAGATGCTGAATGGTCAGAAGCTTCAGGGGCCTCAAACATCAGCTGAAGTTTATAAGATCCTTCAGAAGAAGAACATGGTGGACAAgttCCCTCTGTTTGTATCTGTGTATCGGATATGTTTTGAAGGCAGAGATGTGAAAGAATTCATCATTTGTCTCCAGAACCATCCAGAGCACATGTGATCTTCTAGGGTCACATGATCCATAAAGAAATCATGAACAGGAACCATACAGAACCATAGAAACATGTGACCATCCAAAATCCACAAATTGTCCAGTACACATCATACTCTAGAACCATACTGATCACAGAACCATCCAGAACCATCCTGGTCATGTACCCTTTCTAGAACCATCCAGTACCCCTTCCAGAACCATCCAGATTATGTATCCTTTGTAGAACCATCCAGATTATGTACCCTTTCTAGAACCATCCAGTACCCCTTCCAGAACCATCCAAATTATGTACCCTTTCTAGAACCATCCAGATCGTGTACCCTTTCTAGAACCATCTAGATCATGTACCCTTTATAGAACCATCCAGTACCCCTTCTAGAACCATCCAGATCATTTACCCTTTGTAGAACCATCCAGATCATGTACCCTTTATAGAACCATCCAGATCATGTAACTCTTTTCAGATATTTTCAGAGCACAGGAACATTCTAGGACCAGATGTGATCATGTAAACCAACAGGACTATAATACGTCATGTATACCTTCTAGAAATATCCAGAGAAAAAATCCACAATCCTTCTAAAACCATCTAAATATGGTTCCAGATCATGTGATGTTTTTACTGGAGAGCTGCCTAACGCACAACATTACAGTTCCACTACAGACTAAAGCCCACTAAAGTCCACTGAGCACACACAGGAACTCACACAGGTTCCACCCTACAAAAGCACTACAAACACTTATGATTAGCGATCGTAATATAATCTTCCTTCATGTTTGTGCATCATTAAGTAATAAGatgaataacacatttttaataatgattgTTTATTGTAATGCTTGTTTAAGGTACATGTTTAAAGCTGATTGATTGGTTTAGCTGAAATACAATCATTATAAATCAGAGAATGATAAATGTTTTAGCAAAGTGTGAGTTTTAATACTGACAAACAATAAAAGTACACAATACAAGTGTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167346 lncRNA upstream 21805 45246 ~ 45804 (+) True G141546
TU167333 lncRNA upstream 33320 33604 ~ 34289 (+) True G141533
TU167413 lncRNA downstream 47703 136541 ~ 139266 (+) True G141601
TU167437 lncRNA downstream 100991 189829 ~ 190245 (+) True G141625
TU167453 lncRNA downstream 114303 203141 ~ 203683 (+) True G141641
TU167454 lncRNA downstream 116793 205631 ~ 205865 (+) True G141642
TU167458 lncRNA downstream 118487 207325 ~ 217714 (+) False G141643
XM_026911871.2 mRNA downstream 13982 102820 ~ 114936 (+) False LOC113525374
XM_026911870.2 mRNA downstream 13982 102820 ~ 114935 (+) True LOC113525374
XM_034307532.1 mRNA downstream 26708 115546 ~ 127338 (+) True fabp10b
XM_026911879.2 mRNA downstream 38870 127708 ~ 133407 (+) True LOC113525382
XM_026911543.2 mRNA downstream 235308 324146 ~ 329984 (+) True LOC113525100
TU167368 other downstream 4248 93086 ~ 96060 (+) True G141566
TU167477 other downstream 124110 212948 ~ 235521 (+) True G141647
TU167690 other downstream 652011 740849 ~ 742201 (+) False G141823
TU167699 other downstream 678217 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 778831 867669 ~ 869091 (+) True LOC117598023

Expression Profile