RNA id: XM_034307116.1


Basic Information

Item Value
RNA id XM_034307116.1
length 3036
RNA type mRNA
GC content 0.49
exon number 10
gene id grm8b
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17597073 ~ 17723081 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTATTGCAGCTGCTGCTCTCTGAGCACCAAACTGCAGCTCTGAGCTTCTGCGCTTGCATTCTCATTAGAACAGTGGAGATCATTTAACACGCGAAGGCAACACAATAGGTGAAACTCGATTTCACAGACTCAGCCTCAGCTGTAGCCAAAAGTTGTGCTTGTCCTCTGTTTTCTACTTTTACCCCTGTCTCGTTCCACGTGCATAAACGATTTTTGCGCACAGACATGATGTGTAGATATGTTAACTGACCCGGCGAGTCTTACCCTTGACTTAGTCAGGAGAAGAAAGGAAACAGTAATTATCCACACAGGAGGCATGCAGCTGCGAGTAtgagtgtgtttggtgtgtgtgaggagagctGATGCTGCAACCTGCTCCGCGCGCTCTCCTCCAGCACAGCAGCCGGAAACGGTCACCGGAGCGCCACCATCACCAgGGTCCACAGGAGTCTGTGAGATCTGCAGCCTAGATCACTATGTATGATTGCTAAATGCACCATTCCCCTTCTCACACACAGTATTCCATCCACGGCCCTGTCACACCGATGATTAACCTTATGCTCTGGAATCTGAGGAGCAGAGAATGGTCGCTCCACTTTGGGATCTCCGCAAACAGGTCATTACTTCAACACTGAGGTTTACTGGTGATACTTTTCACCTTGCACACCTGTTTCATACTTCCCACCTGCTACAGTAACTGCTGCACGCCTGACAGGACTCCACTTCTGTTTATTTGCTTGCTTAGTTATTTAACGCATCACTATCATGGCAAGGTACTCAACCTGGCAGGGTTGCCTTTTTATGCTGTCAGTGGCGAGCTGCTCCTTCACCTATGGACCTCAGCGCCTAGTGGACCCACTCGTGCCCCCAGCTCCTGAATATGCTCATTCCATTAGAATAGATGGAGACATCATCCTGGGAGGCCTCTTCCCAGTTCATGCACGAGGGGAGCGTGGCGCCCCATGCGGCGAgctaaagaaagagaaaggcatTCATCGCTTGGAGGCCATGCTCTTTGCTATTGATCTCATTAACAAGGACCCTGAGCTGCTGCCCAATATCACGCTGGGTGCTCGCATCCTGGATACATGCTCAAGAGACACGTATGCTTTGGAGCAGTCACTCACCTTTGTGCAGGCACTGATCGAGCGTGACCCGTCTGATGTGCGCTGTGCCAGTGGAGAGCCGCCCATCTTTGCCAAACCTGACAAAATTGTAGGGGTGATTGGTGCATCTGCAAGCTCTGTCTCCATCATGGTAGCCAACATCCTGCGGCTGTTTAAGATTCCTCAGATCAGCTATGCGTCAACTGCTCCAGAGCTGAGCGATAACACCCGCTATGACTTCTTCTCTCGTGTGGTGCCGCCTGACTCTTACCAGGCCCAGGCTATGCTGGACATTGTCATGGCCATGGGATGGAACTACGTCTCCACACTGGCGTCAGAGGGCAACTATGGCGAGAGTGGTGTCGAGGCCTTTGTCCAGATAAGTCGTGAAACTGGTGGTGTGTGCATTGCACAATCTCTGAAGATCCCCAGAGAACCCAGGCCTGGAGAGTTCAACAAGATCATCTCACGACTGCTTGAGACTCCCAATGCTCGTGCCATTATCATGTTCGCAAATGAGGACGACATAAGACGTGTTCTTGATGCTGCTAAGCGAAACAATCAGACAAATCACTTTCTCTGGGTGGGCTCAGACAGCTGGGGCTCGAAGATCTCCCCTGTACATCAGCAGGAGAAAGTGGCTGAGGGAGCCATTACTATTCTGCCTAAGAGAGCTTCAGTGGAAGCTTTTGACAGGTATTTCAGAAGTCGCAGCTTATCTAACAACAGGAGGAATGTGTGGTTTGCTGAATTCTGGGAGGAAAACTTTGGATGCAAGTTGGGAATGCACGGCAAGCGCCCTGGCAGCCCCAAGAAGTGCACAGGCTTGGAGAAGGTGGGCAGGGACTCCAGCTTCGAGCAGGAGGGGAAAGTGCAGTTTGTGATGGATGCAGTTTATGCCATGGCTCATGCTCTTCACCGCATGCACCGAGACCTGTGCTCCGGAAGCCCAGGACTGTGCTCTCGCATGAGCAACATCGACGGCAAGGAACTGCTGGGTTACATCCGCAATGTCAGCTTTAACGGTAGTGCTAAAACCCCTGTAACATTCAACGAGAACGGAGACGCTCCTGGACGATACGACATCTTCCAGTATCAAATTACTAATGATTCTGCTGAATACAAAGTCATCGGGCACTGGACGGATCAGCTGCATTTAAATATGTACATCCAGACGACCACTCTGACCATGTCTCTGAGCCTGAGTGCATCTGTGTCACTGGGAATGCTCTACATGCCCAAAGTCTATATAATTATCTTTCACCCTGAGCAAAACGTGCCCAAACGCAAGCGCAGCTTCAAGGCTATTGTCACAGCTGCCACCATGTCCAGCAAGCTCAGTCAGCTGGCCAGTGAAAGGCCAAACGGAGAGGTGAAAACTGAGCTCTGTGAGAGTGTGGACAACAGCACATTACCCACCAAAACAACATATGTCAGCTATACCAATCATGCCATGTGAAGATGCATCCTGAGTAGAGGATTCTGGGAAGGATTACTGGCACTGACTGGAACTAAAGCATGAGACTTTAATGTTGTTCATGATAAAGAGAGTGTTTGTTGTACTGAGACAAATCTTGCCTGTTTTTTCTAAGAGTTAAACGTATTGGCCGTACAACAGCGTGACTGGGACAGCACTCACTGCTGGCATAACAACACGTGGAAATGGGACTTCATTGAAGCAGAGgaaaataactatatatataaatatatacatattttaaaaaaaaaatcaaagaaaattaAGGAAATGTTGGAGTCAACCATGATAGTTGTTATTCTAATTGTAAGTATTTTGTGGTTGTGCAGATTTTTTCATTCTTGTCCCACGGTGTGAAATCTGCGTTGGAAAATGCCTTTGTCTCTTGTATCGGCTACTCTGGTCAATTAGCGCTGGTTTGTTAAGTGTGTATATGCCATGGTTGAAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178012 lncRNA upstream 139938 17456920 ~ 17457135 (+) True G150268
TU178009 lncRNA upstream 150613 17446249 ~ 17446460 (+) True G150265
TU178004 lncRNA upstream 162696 17430143 ~ 17434377 (+) True G150261
TU177846 lncRNA upstream 341736 17253667 ~ 17255337 (+) True G150152
TU177842 lncRNA upstream 360127 17236641 ~ 17236946 (+) True G150148
TU178372 lncRNA downstream 109685 17832766 ~ 17840449 (+) True G150590
TU178374 lncRNA downstream 188556 17911637 ~ 17912583 (+) True G150592
TU178394 lncRNA downstream 191544 17914625 ~ 17915242 (+) True G150609
XR_004578772.1 lncRNA downstream 407765 18130846 ~ 18139145 (+) True LOC117598020
TU178595 lncRNA downstream 459474 18182555 ~ 18184010 (+) True tmem17
XM_026919711.2 mRNA upstream 2343 17576708 ~ 17594730 (+) False znf800a
XM_026919709.2 mRNA upstream 2343 17578393 ~ 17594730 (+) False znf800a
XM_026919710.2 mRNA upstream 2343 17578394 ~ 17594730 (+) True znf800a
XM_026919792.2 mRNA upstream 32909 17562187 ~ 17564164 (+) True si:dkey-42p14.3
XM_026919247.2 mRNA upstream 45549 17528241 ~ 17551524 (+) True lamb1a
XM_026919314.2 mRNA downstream 37237 17760318 ~ 17803798 (+) False pot1
XM_026919312.2 mRNA downstream 37270 17760351 ~ 17803798 (+) True pot1
XM_026919315.2 mRNA downstream 37270 17760351 ~ 17803798 (+) False pot1
XM_034307356.1 mRNA downstream 37332 17760413 ~ 17803798 (+) False pot1
XM_026919316.2 mRNA downstream 48780 17771861 ~ 17803798 (+) False pot1
trnav-aac_18 other upstream 1555826 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1774482 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1776917 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1777500 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3776411 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 111156 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 111156 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 111156 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 951929 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 998514 18721595 ~ 18724686 (+) True urahb

Expression Profile