RNA id: XM_026918647.2


Basic Information

Item Value
RNA id XM_026918647.2
length 1925
RNA type mRNA
GC content 0.45
exon number 11
gene id sfxn1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7401497 ~ 7418528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTGCAGCTCGATGGAGGGCGCTTCATCTCCCCTGTTTAAACAGCAGACAGGCTTCAGCACTGCGAGTGTGTGGACTGCTGAGATTTCAACTGCTGACTACTGAAGCACTGCAGCATGGCGGCCGAGCTCTCCACCTCGATAAACATCAAAGAGCCTCGCTGGGATCAGGGGACCTTCGTGGGCAGAGCCAAGCATTTCTTCACCGTCACAGACCCACGCAACGTTCTGCTGTCTAACGAGCAGCTTGAGAAAGCACGCAGGATCATTCAGGATTACAGACAGGGAGTGGTGACTCCAGGTCTGACAGAAGATGAGCTCTGGAGGGCCAAATACATTTTTGACTCTGCGTTCCATCCAGACACGGGTGAGAAGATGCTGCTGATCGGCCGCATGTCAGCTCAGGTGCCCATGAATATGACCATCACCGGCTGCATGATGACCTTCTACAGGACGACTCCAGCAGTGCTGTTCTGGCAGTGGATCAATCAGTCCTTTAATGCAATAGTCAACTACACCAACCGCAGTGGTGATGCTCCCATTACAGTAAATCAGCTTGGCACGGCGTACGTATCGGCTACGACAGGAGCTGTGGCCACGGCTTTAGGACTCAACTCTCTAGCAAAGCACGTCTCCCCACTTGTAGGACGTTTTGTGCCATTTGCTGCTGTAGCTGCTGCTAACTGTATCAACATTCCGCTGATGAGGCAAAGAGAGCTGAAGCACGGCATTCCAGTGATGGACCAGAACGGAAATCGGTTAGGGGAGTCTTCGAAAGCGGCACAGCAGGCAATCTCACAAGTGGTGATCTCCAGAATCCTCATGGCCTCTCCTGGAATGGcaattccACCATTTTTAATGAACTCCCTGGAGAAGAAAGCATTCCTGAAGAGGTTCCCGTGGATGAGTGCACCCATTCAGGTCGGCCTGGTGGGATTCTGCTTGGTGTTTGCCACTCCGCTGTGCTGTGCGCTGTTCCCACAGAAGAGctcaaTGGCTGTGAGCCGTCTGGAGCCTGAGCTGCAGGAGAAGATCCGCTCAGATCACCCAGGAGTGGAGAGAGTTTACTTCAACAAAGGATTATGAGAGGAAAAAACTCGTCTCCTCCCAACACGGCCATAAAAACCCCTCTCATCTCATCGTGTTTTTACAGCGTGCCAAAGTTCCgttcctctgtctctcctcaaGGACGTCCCGACTCAGCTGTTTCGTAAGATGTCGTTCCTAGTGACAGTTTTTAATCAGGAGAATATTTTGGATGGTGCAGATCTGTGCTAGTGTTAGGAAAGACTATTTGTCTAAAATGGTGCTCTTTCTGAttggctagttttttttttattttatttagtatttgttGATTACAGTGCAGTCTATAAGTACATAAACTTGGATATTTAAGTTTTTTAGTCTCTACACTACAGCAgattggatttgaaatgaaacatcaTGATCATGCTAGCTTTAAATCCAGCTTCTAGGCATCACAGCCTTTTTATACACCATTGCTGGGACCAAAACCACTTTGAATCATTGACGCATCTGTAAATGAAACGTCACGTTTAGTACTTTCAATACATTCGATGACTGCGCTGGAATTATGTTTACTGTCAAACCAAACCATCTCCATGTGCCATCTGTAATAAGGAACAAATATGGTGGTGTATTttctgtcagtgtttttattgcatTGTTGTAATTAGTAATTGATGTTCATGTCTGAATGAAAGCTGCTTTTGACATTAAATTGccaaaaaaagaattaaaagtttactttaaaggtacactaagTAGAAATTTCCACTGATGttcacagtattaaaaaaaaaaaaaaaagtattttaaatatttactttgtgACACAGTCAATTATGGAGCCCCTGAAAGGGCATAgtgtaaattttattaaatatctatatctatctatct

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23500 SFXN1_3; sideroflexin-1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171130 lncRNA upstream 134582 7239003 ~ 7266915 (+) True G144486
XR_003403117.2 lncRNA upstream 262125 7132850 ~ 7139372 (+) True LOC113530161
TU171111 lncRNA upstream 264582 7132850 ~ 7136915 (+) False LOC113530161
XR_004578812.1 lncRNA upstream 264782 7132850 ~ 7136715 (+) False LOC113530161
TU171076 lncRNA upstream 439559 6958600 ~ 6961938 (+) True G144444
TU171170 lncRNA downstream 233 7418761 ~ 7420820 (+) True G144523
TU171231 lncRNA downstream 29342 7447870 ~ 7448531 (+) False gabra6a
TU171240 lncRNA downstream 156580 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 157532 7576060 ~ 7576788 (+) True G144661
TU171371 lncRNA downstream 159600 7578128 ~ 7578377 (+) True G144665
XM_026918781.2 mRNA upstream 1072 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA upstream 1073 7389499 ~ 7400424 (+) False LOC113529540
XM_034307653.1 mRNA upstream 136801 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA upstream 136801 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA upstream 136801 7253321 ~ 7264696 (+) False LOC113529730
XM_026918713.2 mRNA downstream 4341 7422869 ~ 7434230 (+) True LOC113529491
XM_026920013.2 mRNA downstream 21167 7439695 ~ 7444266 (+) True ccng1
XM_026919624.2 mRNA downstream 29352 7447880 ~ 7466552 (+) True gabra6a
XM_026919243.2 mRNA downstream 49244 7467772 ~ 7525350 (+) True gabrb2a
XM_026919245.2 mRNA downstream 49244 7467772 ~ 7523914 (+) False gabrb2a
trnag-ccc_3 other upstream 175949 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 444981 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 448624 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 450354 6951072 ~ 6951143 (+) False trnaw-cca_10
LOC117598150 other upstream 492921 6907189 ~ 6908576 (+) True LOC117598150
trnaa-agc_3 other downstream 190513 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 193242 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 195977 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 201409 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 215970 7634498 ~ 7634570 (+) True trnaa-agc_7

Expression Profile