RNA id: XM_026918692.2


Basic Information

Item Value
RNA id XM_026918692.2
length 3840
RNA type mRNA
GC content 0.51
exon number 28
gene id mov10l1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19431426 ~ 19446347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGTAGGTGTGCACGCATTCATGAGCAGCAATGGGGCCTATGCATTGCTAGTTGTTTATGTGTTGTTTATGTGTGGATCGTGCATGGCTAAACTCGCGCAGAGAAAGTCTCAAGATCCAAATGAACCGAACAGAATCGACTCAGAGAAGACGTCAGTGATTGCACTGAGAGAAGTCATGGTGTCTGCTGTACAGTTTCTCATCTCTAAGCTGCTCTCTCCACTTTGGAGGACAGtggaggatgaagaggatggaTTTTACTACAGCACAGGTATGGAGGAGATACGGCAGATGCGAGGCGGTGTGGTGACTCAGCTGTGTCAGAATTATGGGCTGATTGACCATTCTGTGTACTTCACTGCTGGAGAGGTGCTGGGAGGAGTGCCTCTGCACCTGGGTGACGCTGTTAATGCTCTGGCCGTTCGAGACGGAGCCCATGGAGGGTGGAGGGCATTAAGGGTAGAGAGGCAATTGGATGCATGGGATGGAGGCAGGGGCTCGCTCGAAACAGATGCTAATAAGCTCCGGTCTCTGATTGGAACAGTAACGTCATGTGATAAAGATGGCGGATTTATAAATCAGACGACATATTTCCCTCGATCTGCCCTGTGTGAAGGTTTTGAGCCTATGAAAGGAGACTGGGTGCAGGCAGAATACTTCATTAGCCCCACGGAGTGGAGCAGTCAGGCTCGAACTGTTGCCCCGCTACGATACCAGCGCATGGACCAAgtgtgtgtgtcgaGTATGTTTGGCAGTAGTGGGGTTGTGGGAGACagtgtgtttttcagtttggaTTCTCTGCTGTTGCCTGCTGGATACAAACCCACACGAGGAGATGTAGTGAGTGTTGTGGTGGTGGAGAGCAATCAGTCACTGTATTGCTGGCGAGCACTCTGTATGGCCCCCATTAATAAACACAGCCTGAATGGGTCGGTGACGATGTTGCCGGAGGATGAAATCCAGACACTGCTAGAAAATAAGGGAGGACTGGTGGTCAGTGAAGAAACACAGTTTGGATCTTTGTTGCTGGGGGAGAGTAAAGAGCTGCTCATCTTTCTTCACAATACTGGTTCAGAGACTCACAAACTGAAGTGCTGTGAATTTGCTGGCTGGGACTCTGAGGAGCAGTTTTCATTTGGACTGACACCACGTTATGCCAGCACTGCCATTCCAACAAACCCCAAGCTTCAACAAACCGTCCCAGCCAACCCCTACATGCCCTTCATCCGGGCCCCAGGCAGGGGCCTTATAGCGGGGCATGGCCTCTATGTGCTGCCCAATCCTTCCTCTGTACCTGTGGAGGAAGATGAGGAAAGACATGAAAATGATATTGATGTAGATATTGATGAAGGGGTTGCAGATGATAGAGAGAAGAATGCTGAGGAGGCACCACGTCTGCGGGCAATAGAGAGAAATCTGAAAATATTACCAGGAGAGAAGGTGTCCGTTGCTGTAGGCTGCCAGGCTAAGAACCTGGGCCGAtgtgcagagctgctgttgctgcACTTCTCCACATTCACCATCGGGCGGCGCTTGGAGGTTTCTGTGAGCAGTGTGGAGGAGAAGTTGTTGAAGCCCAGTGCCCCCTACTGTCCAGTAGCCCTGCTACCACCAACACCACAGACCCCTGCTCAGGTGGTCACTGTCATGCCTCCCGCACCTCCAGTCAGATTGGTGAGACGGCATCTGCCCAATTTCCTGGGTAACTACCCAGTGCCACAGGCCCTGAGAGATTGTGTGGAGGCCAAAACCGATGTGCTGGTAGTTCAGCCTGCTCTTGGGGAGCCATTGTGTCTGTCCTCCATGTTGCCTCGTTTCTCTACCCTGCTTTGGCTGGAGGAGCTGCAGGCTGAAAGAGAGCTCAGAGAGTTCAGTATTAGTGGTGCCCTCCTAAGGAAGGGAGCAGGGTACCTGCACCTGGAGGTGCCTGGATTGAGTGAAGGAAGGCCCAGTCTTTTCATAGGAGACAAAGTTGTTCTGAAGAAGCCATGCAGTGGAGGGCTTGTTGTGGAGTATATCGGCTATGTTACTGAGATCAGTGAGGAGGATGTGAGTTTGCGGGTAAACACAGAATTACTGAATAGCTACTTGGGGGAGCCACTGGACGTGGAGTTTACATACAACAGACTGCCTATGAAAAGATGCCACTGTGCTCTGGAACAGACCAAGCACTTTCGAGAGAATGTGCTCTTCCCCAGATATTTGCAGCTGCAGAGCCCTTTGTGGACAGGTGATTGGGAGCCTGAACTGTCACCCAAGCAGGACGAAAACAAAACAACCCAAGAAGATGAAGAGGGTAGAGAAAAACCCTGTGAGAATAGGGAGAAGCCATCTTCTCTGACTATGGATATGGTCTCTGTGGcaacacagacaaaaacagatttaTGTACAGTGGCTAAGCCCATCCCAGACCCAGGCAAGTTCTTTAACTGTAATCTTAACCCTGCTCAGAAGGAGGCAGTCAAACGCATTCTCAGTGGAGAGTGTCGCCCCACTCCCTATGTGCTCTTCGGCCCCCCAGGCACAGGCAAAACCATCACGCTCATAGAGGCCATACTGCAGGTGTATTACCGTGTGCCAGGCAGTCGTGTTTTGGTCTGCACTCCATCTAACAGCGCTGCAGATCTTGTCTGTATCCGACTGCATGAGAGCGGCTACCTGCAAGCTGCCAGCCTGGCACGAGTCAATGCCACCTGCAGGATTGAGGAGTCTGTCCCTGAGGTGTTGCGACAGTACTGTCATGCTGGAGAGGATGTACGCCATGCTTCTTTCCACCGTATTGTTGTCAGCACCTGCTCCAGCGCTGGCATGTTTTACCAGATTGGCTTAGGTGTTGGCCATTTTACTCATGTGTTTCTGGATGAGGCTGGTCAAGCTACTGAGCCTGAGTCTCTGATTCCTCTGGGCCTGGTGTGTGAGAAGACGGGCCAGATAGTCCTGGCTGGAGACCCAAAGCAGCTGGGTCCAGTAGTGAAGTCTAAACTTGCTGAAGCTTTTGGACTGGGAGTGTCTTTGCTCGAGAGACTGATGGCCACCCCTCTGTATTCCTGCACTGAGAAGGGCTACAACCCGTTACTGGTGACTAAGCTGGTGTATAACTACCGCTCCCATGAAGTGTTACTGGAGTTACCGTCTCGGCTGTTCTACGGTGGTGAGCTGTGTGTACGCTCACAGAGAGCTGTCGTGGACTCCCTGTGTCACTGGAGCCGCCTTCCTACCAAGGGTTTTCCCCTCATCTTCCATGGAGTCAGGGGCACAGAGATGAGGGAAGGCACTAACCCGTCCTGGTTTAACCCTGGAGAAGCAGTGCAGGCCATGCTTTACTGTTGCCAGCTGGCGAAAAGACTCTACAACCCCATACCAGCTACTGACATTGGCATCATCACTCCTTACAAAAAACAGGTGGAAAAGATTCGAGTGCTGTTGCACAGGGCTGGGCTTGCTGACATTAAGGTTGGCTCAGTTGAGGAATTCCAAGGACAGGAGTTCTTGGTCATTATCCTCTCTACGGTGCGCTCCAATGAGGCGCTACCAAGCAACGATCTGCAGAGTGCACTGGGCTTTCTGTCCAACCCCAAACGCTTCAATGTGGCCATCACGCGACCGAAAGCTCTTCTTATCATCATCGGCAACCCACACGTCCTGATCAAGGACCCATGTTTTCATGCACTGCTGCAGTACACCTATGAGAATGGGGCTTTCCTTGGCTGTGACCCTCCTGTCTCCCTGCGAGCTGCTGATAGgGCTGCTTCTAAAGCGAAGGAAAACACGTATTAAGCCGAATTCTGAACTGGATATGCTGTAAAGAGTCATGTTGtgtatcaaataaaaaataaata

Function

GO: NA

KEGG:

id description
K13983 MOV10L1; putative helicase MOV10L1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179381 lncRNA upstream 7268 19423440 ~ 19424158 (+) True G151457
TU179374 lncRNA upstream 17974 19413235 ~ 19413452 (+) True G151450
TU179372 lncRNA upstream 19393 19411601 ~ 19412033 (+) True G151448
TU179370 lncRNA upstream 24100 19406606 ~ 19407326 (+) True G151446
TU179371 lncRNA upstream 27028 19403972 ~ 19404398 (+) True G151447
XR_004578648.1 lncRNA downstream 164391 19610738 ~ 19612230 (+) True LOC117597885
TU179631 lncRNA downstream 166307 19612654 ~ 19612937 (+) True G151662
TU179653 lncRNA downstream 283390 19729737 ~ 19782913 (+) True G151683
TU179652 lncRNA downstream 286357 19732704 ~ 19748053 (+) False LOC113529760
TU179666 lncRNA downstream 363450 19809797 ~ 19815626 (+) True G151694
XM_034307282.1 mRNA upstream 46522 19323331 ~ 19384904 (+) False srpk2
XM_034307283.1 mRNA upstream 46522 19342124 ~ 19384904 (+) True srpk2
XM_026918965.2 mRNA upstream 46522 19349618 ~ 19384904 (+) False srpk2
XM_026918966.2 mRNA upstream 46522 19349618 ~ 19384904 (+) False srpk2
XM_034307581.1 mRNA upstream 139316 19285785 ~ 19292110 (+) False chid1
XM_034307526.1 mRNA downstream 3196 19449543 ~ 19451833 (+) True szl
XM_034307522.1 mRNA downstream 10402 19456749 ~ 19464228 (+) True dbx2
XM_026919870.2 mRNA downstream 10402 19456749 ~ 19464228 (+) False dbx2
XM_026919713.2 mRNA downstream 29171 19475518 ~ 19542669 (+) True nell2a
XM_026918779.2 mRNA downstream 146154 19592501 ~ 19595962 (+) True LOC113529538
XR_004578759.1 other upstream 46522 19349618 ~ 19384904 (+) False srpk2
TU179313 other upstream 167533 19260624 ~ 19263893 (+) True G151401
TU179056 other upstream 306294 19121164 ~ 19125132 (+) False faap24
XR_004578793.1 other upstream 353558 19076595 ~ 19077868 (+) True LOC117598072
TU178953 other upstream 706740 18721595 ~ 18724686 (+) True urahb
TU181223 other downstream 2606267 22052614 ~ 22058158 (+) True LOC113529593
TU181225 other downstream 2606267 22052614 ~ 22058158 (+) False LOC113529593
TU181233 other downstream 2630524 22076871 ~ 22078453 (+) False arpp19b
TU181234 other downstream 2630524 22076871 ~ 22078453 (+) False arpp19b
TU181281 other downstream 2769928 22216275 ~ 22266382 (+) True G153014

Expression Profile