RNA id: XM_026918713.2


Basic Information

Item Value
RNA id XM_026918713.2
length 2683
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC113529491
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7422869 ~ 7434230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTGCTCGGAGGATGGCATCTCAGCTTCACCAGCTGCATTTTAATGTGAAGGGGGAGTTTCCATCAAGGGGCCCTGCTGAAAGTGTAGAGCTGTAAGCTGTTTAGGCTTCAGAGAAAACTaagtgtcagagagagaacagatgaATCTGAAGACCATCAGCTTCACTGATAGATCAGCATGGCTGCCGTGGACGTAGACACATACCCTACTGAGGAAAAGAGGACTCTGACTCTCGGCGGCCATGTTGGTTTTGACAGCCTCCCAGATCAGCTTGTTAGCAAATCAGTGTCTCAAGGCTTCTGCTTCAACATCCTCTGCGTGGGTGAAACTGGGATTGGAAAATCAACATTAATGAACACTCTGTTCAACACAATCTTTGAAAACGAGGAGGCCAGTCACTATCAGAGTGGTGTGTATTTACGAGCCAGGACGTATGAGCTGCAGGAGAGCAACGTGGACCTCAAGCTGACGATCGTCAACACCGTGGGGTTCGGTGATCAGGTCAATAAAGAAGAGAGCTATAAACCCATTACGGACTACATTGATGCCCAGTTTGAGAATTTCCTCCAAGAGGAGCTGAAGATTAAACGTTCACTCTTTAACTACCACGACACGAGGATCCACGCCTGTCTATACTTCATCTCTCCTACAGGCCACTCGCTCAGATCCCTCGATCTGGTCACCATGAAAATGTTGGACAGTAAGGTAAACATCATTCCCATTATCGCTAAAGCAGACACAATCTCCAAATCTGAGCTTCATAAATTCAAGATTAAGATCATGAGTGAGCTTGTCAGCAATGGCGTTCAGATTTACCAGTTCCCCACAGACGACGAAGCTGTTGCAGAAATCAACTCCTCCATGAACGCTCATCTGCCGTTTGCTGTGGTGGGAAGTGGAGAGGAGGTTAAAGTGGGAAACAAGCTGGTGAGAGCCAGGCAGTACCCATGGGGAGTGGTACAGGTGGAGAATGAGAGCCACTGTGATTTTGTGAAGCTGAGGGAGATGCTGATCCGGGTGAACATGGAGGACCTGCGAGAGCAGACACACGCACGTCACTATGAGCTGTATCGCCGCTGCAAACTGGAGGAGATGGGCTTCAAAGACCCCGACGCTGACATGCAGCCATTCAGTCTGCAGGAAACGTACGTggctaagagagaggagtttgtcgCAGAGCTGCAGCGCATGGAGGAGGACATGCGCCAGATGTTCGTCGTCAAAGTAAAGGAGACGGAGGCTGAGCTGAAGGAGAGAGAGcgtgagCTGCATGATCGTTTCGAGCGTGTCAAGCGTATGCACCAGGAGGAGAAGAAGACTTTGGAAGAGAAGCGCAGAGAGCTAGAGGAGGAGATGAACTCCTTTAACAGGAGGAAGATGGCGGCTGAAACACTGCAGGCTCTCTCACTCCAGACCTCCAAAGACAAGAAAAGttgAGTTATTCACATTGTAAAGCTGAGCTGAAGGAatcaacattttcacatttttatcagGACAACAACATCTAATGGAGCAACGCCTCTTCTCCTTCTGTTATTAAATACCTGCTCACAGCACAAATGTAAATCCAGCAATAAGTAACTTTTATATGATCTGATTAATACTTCAACTGACTGGCACTTACACCGTACATGCATTAGTTACTCTGCACATGCATTAATTACACTGTACATACATTAGTTACACTGTACATACATTAGTTACACAGTACATGCTTTAGTTACGCTGCACACGCATTAGTTACGCTGCACACGCATTAGTTACCCTGCACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACACTGCACACGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACACTGCACACGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACACTGCACACGCATTAGTTACCCTACACATGCATTAGTTACACTGTACATGCACTGGTTACCCTGCACACGCATTAGTTACGCTGTACACGCATTAGTTACACTGCACACGCATTAGTTACACTGCACACGCATTAGTTACACTGTACATGcattagtttcactgtacaTGCACTGGTTACCCTGCACACGCATTAGTTACGCTGTACACGCATTagttacactgcacacacattagTTACGCTGTACACGCATTAGTTACACTGTACACGCATTAGTTACACTGCACACGAATTAGTTACCCTGCACACACATTAGTTATCTGTACACGCATTAGTTACACTGTACACGCATTAGTTACACTGCACACGCATTAGTTACCCTGCACACACATTAGTTACGCTGTACACGCATTAGTTACCCTGCACACGCATTAGTTACACAGCACATGCATTAGTTACGCTATACGTGCATTAGTTTCACTGTACGTGCATTAGTTACCctgcttgtgcgatattgcataaataatcagcaccttctgaccaatcagatttgagaatggACATTTCCCCATTATGTTCAACTCTTCATGTTCCTGCTGCTAGGAGCCcagtgctgcagtgtgtagcttTGCCTTGTTCTGTCATTcagttcctctt

Function

GO: NA

KEGG:

id description
K16939 SEPT6_8_11; septin 6/8/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171170 lncRNA upstream 2049 7418761 ~ 7420820 (+) True G144523
TU171130 lncRNA upstream 155954 7239003 ~ 7266915 (+) True G144486
XR_003403117.2 lncRNA upstream 283497 7132850 ~ 7139372 (+) True LOC113530161
TU171111 lncRNA upstream 285954 7132850 ~ 7136915 (+) False LOC113530161
XR_004578812.1 lncRNA upstream 286154 7132850 ~ 7136715 (+) False LOC113530161
TU171231 lncRNA downstream 13640 7447870 ~ 7448531 (+) False gabra6a
TU171240 lncRNA downstream 140878 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 141830 7576060 ~ 7576788 (+) True G144661
TU171371 lncRNA downstream 143898 7578128 ~ 7578377 (+) True G144665
TU171439 lncRNA downstream 251518 7685748 ~ 7688153 (+) True G144715
XM_026918647.2 mRNA upstream 4341 7401497 ~ 7418528 (+) True sfxn1
XM_026918781.2 mRNA upstream 22444 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA upstream 22445 7389499 ~ 7400424 (+) False LOC113529540
XM_034307653.1 mRNA upstream 158173 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA upstream 158173 7253321 ~ 7264696 (+) True LOC113529730
XM_026920013.2 mRNA downstream 5465 7439695 ~ 7444266 (+) True ccng1
XM_026919624.2 mRNA downstream 13650 7447880 ~ 7466552 (+) True gabra6a
XM_026919243.2 mRNA downstream 33542 7467772 ~ 7525350 (+) True gabrb2a
XM_026919245.2 mRNA downstream 33542 7467772 ~ 7523914 (+) False gabrb2a
XM_034307125.1 mRNA downstream 102105 7536335 ~ 7574229 (+) False atp10b
trnag-ccc_3 other upstream 197321 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 466353 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 469996 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 471726 6951072 ~ 6951143 (+) False trnaw-cca_10
LOC117598150 other upstream 514293 6907189 ~ 6908576 (+) True LOC117598150
trnaa-agc_3 other downstream 174811 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 177540 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 180275 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 185707 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 200268 7634498 ~ 7634570 (+) True trnaa-agc_7

Expression Profile