RNA id: XM_034307125.1


Basic Information

Item Value
RNA id XM_034307125.1
length 5296
RNA type mRNA
GC content 0.47
exon number 22
gene id atp10b
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7536335 ~ 7574229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCATCTTGAACCTGGTCAATTAATTCTACTGATGTGCCAATGTCTACATAGTTACATACTTAGTCTCTCAGTGCCACGTGTCCAAGTGATATGGGAGAAGTGTATGTACGAGGGAAAACATTTCTGTAGGTTGTGCACCGAGACAGCTGAGACAGCATGACCTGGACTAGTGGTCTGGCCTCAGCCTGGGCCTTCTGGACTGGGCAAGGAAGTGGAGACAGCGATGTGAGGACATTAGTATCGAACCTGCTTTACGAGAACCAGAAACAAAAAGATCATCCCAACAAGAACTATGCGGGAAATGGCGTCAAGACCACAAAATACAGCATCTGGTCCTTCATCCCTATGAACTTGCTGGAACAATTCCGCCGGGTAGCCAATATTTATTTCGTGGGCTTGGCGGTGCTAAACTTTATCCCAGCAGTGAACGCTTTCCAGCCACAGGTGGCCATCATTCCCATTTGTGTCATTTTGGCTTTGACTGCCATCAAAGATGCTTGGGAGGATTTCAGACGCTACCAGAGTGATCGTCAGCTCAACAGCATGCCCTGCCTCGTCTACACCAGGAGCCAGCGGAGCTTTGTGGAGAAAAGATGGAAGGATGTACGGGTGGGGGATTTTGTCCGAGTGCTCGCCAATGAGATCGTCCCAGCAGACATCTTGCTCCTGCACACGTCCAACCCTAATGGAGTGTGCCACATGGAGACGGCCAACCTGGATGGCGAGACCAACCTCAAGCAGAGGAAAGTGGTGCCTGGTTTCTCCATACTGAATACTCCATTTGAACCACTAAacttcaacagcactgtggtttgcGAGAAGCCCAACAACAACCTGAACAATTTCAATGGCTTTCTagaaaaagacaagaagaagaCAGGTTTTGACATTGAGAGCTTATTACTACGTGGATGCACTGTCAGAAATACAGCTCATGCCTCAGGGATAGTGGTGTATGCAGGCCATGAGTCCAAGTCCATGCTAAACAATGACAGGCCGAGGTACAAATGTAGCAAGCTGGAGAGAAAGATGAACAAGGATGTGCTCCTCTGCGTGCTTCTGCTCTTCTGCATGTGTCTCATAGGAGCCACGGGTCATATCTATTGGTTGGAGACTTTCCCTAGTATCCCAATCTACTTTATCCCAGAAAGCGATGGGAGTTTTATCCATCCATTGCGGGCAGGGATCTACATGTTCTTTACCATGATTATCCTACTGCAGGTGATGATCCCAATTTCACTCTACCTGTCCATCGAGCTGGTAAAGATTGGCCAGGTGTTCTTCATCACTCAAGATTTGGACCTGTATGATGAGGAGAAAGACACTCGGGTCCAGTGTCGTGCTCTTAATATCACAGAGGACCTGGGCCAGATCCAGCATGTCTTCTCAGACAAGACAGGGACTCTGACTGAGAATAAAATGGTGTTCCGCCGGTGCACTATAATGGGAACTGAATTCCCTCATGAGGATAATGcGACACGATTGGCCATTCTGGCAGGGGAGACAGATCAAGATGAAGAGGTTATTTACCAACAGAACAGACAGCCTTCTCTATTTTCTCTGGAGGAGATTCAGGAAGGCCCAGCAGGAGGCAGAGTGAACTCCAACACCTTTGCCAGGAGCAGATTTCACAGGCCAAGGGTCATAGCAAGAACCCCTGGAATCCTCGCTTTCAGCAGCCCTCTGGAAACTGAGGTGCTTCCAGACCAGACATTGCTCCAGCTAGTAAAAGATGCTGAGTGTGGGAGGAAAAATGCACACTACCTGGAGTTCTTCCTGGCTTTAGCCATCTGTAACACTGTAGTGGTTTCAACAAAAGCGGCCCAGAGACAAAGGGCTAAAAGGCGACACAACTCTTCTCACTCTAGTTCGCTCGAGTGCATGGAGGGCCTGTTGAGTCGAGTAGCATCTCTTGGGAAGCTGATCAGAGGCAAGAGAAGCACTTTCCCTGAGCCTGTACCTATGGACCTCATTGAATCTCCTGCCCATGATGTCCCCAGCCATAATGAATGCAGGACCAGTTGGGGGAGGGCCCGGACAGGAGGCAATCTGTCTGTGATAGAGGATGTTTGTTATGAGGCCCAGAGTCCAGACGAAGCAGCTCTGGTGCACGCAGCCAAGGCTTATGGCTTCACCTTAAAGGAAAGGACACCTGATCATGTAATTGTTCAGCTGCCTCAAGGAACACTGCTGAAGTTTGACGTGCTGGATGTTTTGGCCTTTGACTCGACTCGGAGGAGGATGTCCATAATAGTCCGTCATCCTGAAACCAATGAGATTGTAATGTATACTAAGGGTGCAGACTCTGGCATCATGGAGCGACTGCAGAATTCCTTTGAAGACAAATCACACCTAAAAAGTGAGAGTAGAAATATTGCATATAAGACTCAGCAGGACCTTGACATGTACGCTAGGGATGGTTTACGGACCTTGTGTTTCACAAGAAAGGTTGTAAGTGAACAGGCTTATAGGAACTGGTTAGTTATGAGACAGGAAGCCATGTCAGCCATAGAGAGGAAAGAAGAGCTACTCATGGACACTGCAACATACATGGAAAACAACCTTACACTGCTGgGGGCCACCGGAATTGAGGACCGTCTTCAAGAAAATGTTCCAGAAACCATCCAAGCCCTGAGAGAGGCAGGAATCAAAGTATGGGTGCTGACCGGGGACAAACTTGAGACAGCTGTCAACATTGCCTACTCCTGCAAGCTGCTGGACCAGAATGACCTGGTGTTCACTTTTAAAATGGCGAACAAGGATGTCTGTAGGACCATGCTGAATGGAGCTCTGAGTGAAATACCGCGATTTCTGGGTGAGATGCCCAGAATTGGGTTAGTGATTGATGGTCAAACCCTGGGCCTGCTCCTGGATAATGATCTGCAGGCTCAGTTCTTGCAGTTATGCCAACACAGCCACTCTGTGCTGTGCTGCAGAGCCACACCGCTGCAGAAGGGCAAAGTCGTCACACTGCTGCGTGACAGGCTCAAGGTCACGACTCTTGCTATAGGTGATGGTGCCAATGACGTAAACATGATTCAAGCAGCAGATGTCGGTGTGGGAATATCAGGCCAGGAAGGCTTGCAGGCTGTCATGGCCAGTGACTTTGCAATATCTCGCTTCAAACACCTGAAGAAGCTTCTCCTGGTTCATGGTCACTCCTGTTACACACGGCTGGCAAACATGATCATCTATTTCTTCTACAAGAATGTGGCTTACGTCAACCTCCTGTTCTGGTACCAGTTCTTCTGCGGCTTCTCCGGCACGGCCATGATTGACTACTGGTTCATGATTTTCTTCAACCTCTTCTTCACATCCACTCCACCCATCATGTTTGGCATCATGGACAGGGAGGTTTCTGCCCACATGCTCCTCCACCTGCCTGAACTCTATAAAAGAGGCCAGCATGCTGGGgGATACTGTCGCACCACCTTTTGGATAGCTATTCTAGATGCCTTTTATCAGAGTCTTGTTTGCTTCTTTGTCCCATACTGGACATACAAAGGCTCTGATATTGGCATCTTCTTTTTGGGAACCCCCATGAACACTGTGTCTTTGTTCACCATCATCCTTCATCTGGCAATTGAGATCAAGAGCTGGACAGTGGTGCACTGGGTGATCATGGTGGGGAGTGTCTTGATGTTCTTCATCGTGACTCTGGCTTTCAGCGCCCTCTGCATCAGCTGCAACCCCCCCTCAGACCCATACTGGATCATGCAGCAACAAATGAAAGACCCTGTTTTCTACCTGGTCTGCATTTTAACCACAGTTGTAGCACTGTTACCAAGGTTCACACTTCATGCCCTGACAGGAACGCTAGTGCCCTGTGACCACCTCAAGGCGAGGCAGATAGACCAACTACCTCCAGACCAACGGGACATGTGGCTCCGAGAGTGGAGGAGCCTTAAAGCCCTGTGTAGCTCCTACCCCAGCCTGTCCTCCTCCACACGTAAACGCTCAGCTGCTGCTAGAGTCCAGGATGCAGCTTAGTTCTTCAGCGCTCTCAACAATAGTGTAATGTACAGGAGAATGTGAGCACAAGAACTGGCTTTAGTTTTCAGACTTCCTGAGACACAGAACATTTGATAACAATTTTATACTTTGGCAAACTTGAACTTTTGCCCAAGGCCAAGTGTGCAAGCGTAACCTTTCATAGACAAAAGTGAAGAACTCatgtttatgcaaaaaaaaatactttaatgcAGTGTTAACAACATTGGGAATTGGCCTCAGTCAAGGAAATAACCCGAACATCTTGGAGTCATGCTTGTTTAGTGTCTGAATCTGCTTCCTCCAGCCTCTTCTTCACTAACAAGCCTCATGGATTAAAAGTGGAATTTGACTCCAAGCACATCTCAGAGGTTCTTTCAAGCTCGGGGAGAAGTCAGACTATTATGCTGCACATTCCACACTGGCCGATCAATGCACCACCCACAGTTTCTCAGCAAACACCTCAAAATGAGCTGATTTTCTGGACTTGGTGATTTGAAGTGGCGTTGGCTTCCCTGTGAGAAACCTACTTTCACTGTGAGAAACCTCATTTGTATTCAGAGGCGCTTCGAGCTGCTCATGAAATAATTGAGGTTTGCAGATGTTACATAATATCTTGGTATTTTCAGTTCATGAATCCGTGTTGACAGCATGCTGGGTTTGACggtgagagacagaaacacaagtATTGCAGCACAATTTAGAAGCATCTCTGACTTTTGTCATATTACTTGATtcttaattatttaacattagatTTGACTAgattgtgagtgtgtaagtgtatgtgtgtgcaggaatACAAACACCACTTAATTGTATCTCTGACGTGTCTCTGACGTTCGTCTTTCTTCAAGGAGACAGTGATGATCCCATACAAATGGCCGCATAGTGAGATAAAGCTAAACAAATCTTGGTCTTCTCTTCCACCTCTCGCTTAAGTGCCCTCTGTAGCTGAAGCTTGCAATAAAATGGGTCTAGGAGTGATTGGATTTGGAGAGCTCGTTGCATTTTTATGTAATGATGTCAGAGCCTGGATGAGTGGACCATTTTTGCCATCTTGTGTTAGATTGTTGAACTGcaaactgtatatatactagagagacaggaggaaggGAACAAGATGGATGATGTTTCAATGTCAGTGGTATAGCTTTGCATTAATATATCACAATGTGTGTTAACATTGATCAGTCCATTAAACCAGTAACCTCAATACACATAGTTATTCTCATTCTagtagatatttatttaatataaactatatggccaaaggtttgcagacacctgaccatcacattcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171231 lncRNA upstream 87804 7447870 ~ 7448531 (+) False gabra6a
TU171170 lncRNA upstream 115515 7418761 ~ 7420820 (+) True G144523
TU171130 lncRNA upstream 269420 7239003 ~ 7266915 (+) True G144486
TU171111 lncRNA upstream 399420 7132850 ~ 7136915 (+) False LOC113530161
XR_004578812.1 lncRNA upstream 399620 7132850 ~ 7136715 (+) False LOC113530161
TU171240 lncRNA downstream 879 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 1831 7576060 ~ 7576788 (+) True G144661
TU171371 lncRNA downstream 3899 7578128 ~ 7578377 (+) True G144665
TU171439 lncRNA downstream 111519 7685748 ~ 7688153 (+) True G144715
TU171450 lncRNA downstream 129852 7704081 ~ 7704763 (+) True G144726
XM_026919243.2 mRNA upstream 10985 7467772 ~ 7525350 (+) True gabrb2a
XM_026919245.2 mRNA upstream 12421 7467772 ~ 7523914 (+) False gabrb2a
XM_026919624.2 mRNA upstream 69783 7447880 ~ 7466552 (+) True gabra6a
XM_026920013.2 mRNA upstream 92069 7439695 ~ 7444266 (+) True ccng1
XM_026918713.2 mRNA upstream 102105 7422869 ~ 7434230 (+) True LOC113529491
XM_026919168.2 mRNA downstream 72099 7646328 ~ 7672282 (+) False atp7a
XM_026919167.2 mRNA downstream 72115 7646344 ~ 7672282 (+) True atp7a
XM_026918884.2 mRNA downstream 100312 7674541 ~ 7678733 (+) True sowahab
XM_026919694.2 mRNA downstream 106357 7680586 ~ 7685537 (+) True gdf9
XM_034307405.1 mRNA downstream 214746 7788975 ~ 7797755 (+) True LOC113529727
trnag-ccc_3 other upstream 310787 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 579819 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 583462 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 585192 6951072 ~ 6951143 (+) False trnaw-cca_10
LOC117598150 other upstream 627759 6907189 ~ 6908576 (+) True LOC117598150
trnaa-agc_3 other downstream 34812 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 37541 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 40276 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 45708 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 60269 7634498 ~ 7634570 (+) True trnaa-agc_7

Expression Profile