Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034307602.1 |
| length | 1273 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 10 |
| gene id | LOC113529539 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 11631622 ~ 11669599 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K11488 | PCGF3; polycomb group RING finger protein 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU173740 | lncRNA | upstream | 35296 | 11595516 ~ 11597965 (+) | False | atp6v0e1 |
| TU173699 | lncRNA | upstream | 53829 | 11518322 ~ 11579432 (+) | True | G146645 |
| TU173606 | lncRNA | upstream | 190014 | 11441530 ~ 11443247 (+) | True | G146573 |
| TU173609 | lncRNA | upstream | 215872 | 11417178 ~ 11417389 (+) | True | G146576 |
| TU173544 | lncRNA | upstream | 339778 | 11221581 ~ 11293483 (+) | True | G146513 |
| TU173748 | lncRNA | downstream | 1163 | 11670762 ~ 11671670 (+) | False | G146687 |
| TU173750 | lncRNA | downstream | 1163 | 11670762 ~ 11672456 (+) | True | G146687 |
| TU173751 | lncRNA | downstream | 2237 | 11671836 ~ 11672917 (+) | False | G146687 |
| TU173754 | lncRNA | downstream | 2237 | 11671836 ~ 11672606 (+) | False | G146687 |
| TU173755 | lncRNA | downstream | 3395 | 11672994 ~ 11674373 (+) | False | G146687 |
| XM_034307314.1 | mRNA | upstream | 16617 | 11602447 ~ 11616644 (+) | True | LOC113529641 |
| XM_026918972.2 | mRNA | upstream | 35291 | 11595499 ~ 11597970 (+) | True | atp6v0e1 |
| XM_026918971.2 | mRNA | upstream | 39473 | 11589041 ~ 11593788 (+) | True | rpl26 |
| XM_026918970.2 | mRNA | upstream | 39473 | 11589041 ~ 11593788 (+) | False | rpl26 |
| XM_026919601.2 | mRNA | upstream | 56206 | 11572090 ~ 11577055 (+) | True | arsia |
| XM_026918598.2 | mRNA | downstream | 203297 | 11872896 ~ 11880458 (+) | True | smu1a |
| XM_026918748.2 | mRNA | downstream | 234094 | 11903693 ~ 11924459 (+) | True | tbc1d2 |
| XM_026919978.2 | mRNA | downstream | 294538 | 11964137 ~ 11997179 (+) | True | abca1b |
| XM_026919570.2 | mRNA | downstream | 336671 | 12006270 ~ 12011510 (+) | True | thg1l |
| XM_026918699.2 | mRNA | downstream | 394818 | 12064417 ~ 12070764 (+) | True | irf7 |
| XR_004578672.1 | other | upstream | 326943 | 11295128 ~ 11306318 (+) | False | hrh2a |
| XR_003403100.2 | other | upstream | 329315 | 11295128 ~ 11303946 (+) | False | hrh2a |
| TU173183 | other | upstream | 1085469 | 10543875 ~ 10547792 (+) | False | si:ch73-233f7.1 |
| TU172076 | other | upstream | 2790995 | 8841476 ~ 8842266 (+) | True | G145233 |
| trnaa-agc_11 | other | upstream | 3588851 | 8044338 ~ 8044410 (+) | True | trnaa-agc_11 |
| TU174750 | other | downstream | 1247320 | 12916919 ~ 12917254 (+) | True | G147542 |
| TU175114 | other | downstream | 1679727 | 13349326 ~ 13353253 (+) | False | zgc:172145 |
| XR_003403080.2 | other | downstream | 2091735 | 13761334 ~ 13775183 (+) | False | ces2b |
| trnar-ucg_5 | other | downstream | 2150991 | 13820590 ~ 13820662 (+) | True | trnar-ucg_5 |
| XR_004578669.1 | other | downstream | 4138391 | 15807990 ~ 15822591 (+) | False | LOC113529564 |
