RNA id: XM_034307142.1


Basic Information

Item Value
RNA id XM_034307142.1
length 2723
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC113529540
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7382078 ~ 7400425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATCTGATGCGAGTGTCAGACGCGACGATCCAAGAGCAAATCTGTGCTTCCATCATATCACTGTACAGCCCTGACAAAGCAAAGCACTATGGAGATGTCAGGTGTGTGTCCCACGAGCCTGGTGTACAGGCGTGAGCTGGTAGAGCGCAGCGGTCTGGCTGAGACGCTGCTCCTGTCACTGGCTCTCCTGGAGAAGCAGCTGTCAGTCAAACTGCAGGTCCTACAGGTGCTACAGATCCTCTCCAGGTCTTCTGCAGCGAACTGTAGTTTGATCCTGAAAGCAGAGGGAGCTCAGAAGATCTGCTTCCACATGAACGAGCCGGATCCGTCCGGACAGATGCTGTTCCGCTCCACGGAGATCCTGTGGAATCTTCTGGACAACGGCTCCAGAGAGGAAGTCACCAAGCAGCTCAGCAACATGGACTGCATCATGGTCCTGAAAGAGGCTTTCTTGCATCATCTTCTCAACGGCTTCCGACATTACGACCGGCAACTTCGCAACGACCTTCTAGTAATTACGACCTTGATTGCAGAAAACCCCAGAGCCCCACTAATCGAAAGCGGGTTTGCTAAGCAGCTCATCCTTTTTGCTACTCTTCCTGAGTTGAGGAGCCATAACCCACTGATCCGAAACTTCAAGCTGACCTTCAGTAATGAGGACTTCGAGATGAAGAAGCTGCTGCTGAACCTGATTGTTGTTCTGTCCAGAGATCTAGCAGCGGTACAGCTGTTTAAAGAGAGCCGCGTGATGCTGGCTTTGATGCTGCTCGTTCGGCCCGGTTACTCTGAGGGCAGGCGCAGTGGGAAAGCCCGGCGCAGTTGGACGTCTGTCCAGCAGGAGGAGCTGCAGCTGCAGGCGTTGGCCGCTCTGGCCACGGTGGCGCCGCTCATGCTGGATGAGTACATGGCCTGTCAGGCCAACACCTGCCTGCTCGTGCTTCTGGACTGGTGCACGCAACAAGCAGGAGCCGACTCCTTCTTTGGCCAAGGTCAGGGTTTCCATGGCAGCGGAGGTCGAGGTGGGAGGAAGGCTCAGATGCGGTACTGCACGCGTCTGCTCCGCTGCATGGCCTCACTTAGCAACAGCCTCATCAACCAGGACCTCTGTGACCAGGGAGCCATCAGCCAGCTCCTCGGGTTGCTGAGGCGATTCcaggagaggaaggaggaagaggatgcCGTGTCTGTGGAGATCCAGACCGACGTGCTGGTCACTCTGTCCAGCCTCTGTGAAGGAGACATGCACAGGAAGGATTTGTTTGGAGCGGACGGCGTGGAGGTGACGGTTCGTTATCTGAAAATGGACCCGGCTCAGTTGTACAGTGGCTTGGGACACAACAGACTCATTCTCTCCGCTGTGGACTGTGTGTGGTCTTGCATTGTGGGTTGTTACACCACGGAGGATTTGTTTTTGGAGAAGGAGGGAGCGTTTCTCTTACTCGACTTCATCCAGTCGAGCCCCAGGAGCATGCAGAGCGTGTCGCTGGCGACGCTGCTGGAGCTGTGTGACAACCCCAAAACGCTGGCACACGTCGAGGCCTGGAGGGGTGAGAAAGAGCTCACGGCTCCGGCCCTGCTGCTGCAGCTCTGGAGGAAGGAAGAGGCAGAGATCGGAGTCAAGAGAGACCAGCATGGCCGAATCGCTGATGAGAAAAAGCCTCTTCTCACAATGTATCAAGAACAGGAGCCGCTGGAGTCCATCCCGGCAAACAGACCAAGCTCTGCGATTATGGACGTCTCTGAAAACCTGCGCGGCAAAATCTACGCTTTCTTCTGCAGACTAGGCTTTGAGGATCTGCCAggtctgactgctgaagactccATCACCTTGAGCGTAGTGAGCAGTTACCTGGACTTTAAGGTAGCCGAGGTGTGGAATGAAGTCACGGCTGAGCTGGAGCTGGAAGGCGTGAGACCCATCACTCCAGACGCAGAGGTTCTCAGCACCATCACCCGGGCGAGCGAAGACAAAGTCAAACACGTCTCCTCACTGCAGCAGAGTATTGTGGACCGGAAAGAGCAGGAAGACCTCCTCCAGGAGAAACAAGCATATGAAGAGATCAGTTTAAACCGCAAGCAGCAAGAGCTAACAGCCAAGTCCTGGGAGCATCACGTTGCTAAGACTTCCAACTACAAGATCTTGAAGGAGTCAAAGCTGCTGCAGGAAAGATCTATTGAGTCGTCACGTCCAAGAGAGAAACCAGAGGGCTTTATTTTCCACTCCACTCAGATCTCCGGCCTGCAGACTACTAATTTCTGTGGCCGTGCGTTGGCGATCGACAGCACCCCTACAGAGCTGACTGGGGGACCCCTGGCAAACACAGACCTCGCCCTAGAGAGGGTCCCTATTCAGGGTGGAGCTCTGAGGAAAGTGTCCGCTTCCAACTCGGACCTGGAGCTTCCAAACACCGTCACTGTCAAATGACTGGATGTCGACCACAAGCACAAGACTGCAGTTTAGTAATGTAACAGCTCTGTGGccttcagcagcagcagtttgaCTTAGATGAACTCTGTGCTCACGTTCACtcagatatttaaaatgtttattaatcgATTATACCAAGAGGATGTAAAGTAAATCACTACAGCACTGCTCTTTAACAAGATGTTACACTGAGTACTATTTTTCTAGGAATTAAACTGATACAGaggggtgacaaattaaaggaaaaacccgGGAAATAAAAGTGTATTGAGCAATAACTTTTCTGTGcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171130 lncRNA upstream 122584 7239003 ~ 7266915 (+) True G144486
XR_003403117.2 lncRNA upstream 250127 7132850 ~ 7139372 (+) True LOC113530161
TU171111 lncRNA upstream 252584 7132850 ~ 7136915 (+) False LOC113530161
XR_004578812.1 lncRNA upstream 252784 7132850 ~ 7136715 (+) False LOC113530161
TU171076 lncRNA upstream 427561 6958600 ~ 6961938 (+) True G144444
TU171170 lncRNA downstream 18337 7418761 ~ 7420820 (+) True G144523
TU171231 lncRNA downstream 47446 7447870 ~ 7448531 (+) False gabra6a
TU171240 lncRNA downstream 174684 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 175636 7576060 ~ 7576788 (+) True G144661
TU171371 lncRNA downstream 177704 7578128 ~ 7578377 (+) True G144665
XM_034307653.1 mRNA upstream 124803 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA upstream 124803 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA upstream 124803 7253321 ~ 7264696 (+) False LOC113529730
XM_026947362.2 mRNA upstream 655585 6692793 ~ 6733914 (+) False LOC113547131
XM_026918647.2 mRNA downstream 1073 7401497 ~ 7418528 (+) True sfxn1
XM_026918713.2 mRNA downstream 22445 7422869 ~ 7434230 (+) True LOC113529491
XM_026920013.2 mRNA downstream 39271 7439695 ~ 7444266 (+) True ccng1
XM_026919624.2 mRNA downstream 47456 7447880 ~ 7466552 (+) True gabra6a
XM_026919243.2 mRNA downstream 67348 7467772 ~ 7525350 (+) True gabrb2a
trnag-ccc_3 other upstream 163951 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 432983 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 436626 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 438356 6951072 ~ 6951143 (+) False trnaw-cca_10
LOC117598150 other upstream 480923 6907189 ~ 6908576 (+) True LOC117598150
trnaa-agc_3 other downstream 208617 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 211346 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 214081 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 219513 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 234074 7634498 ~ 7634570 (+) True trnaa-agc_7

Expression Profile