RNA id: XM_026918787.2


Basic Information

Item Value
RNA id XM_026918787.2
length 5932
RNA type mRNA
GC content 0.43
exon number 28
gene id atp8b4
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17262433 ~ 17283926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTAATTTAGGTGGGTTTTTTGTCCCTtatttacatgtacaaaatTGATGCCACAATCCATGTCTGGATGTTGGTGATACGTATCAGGTGCTGGCTATGAATTTATATTGCATGAACACTGTTGTATTATAGATTGTTATCAGGACCTTGCAGATGATTATGTCTGTACTATGGATTCAGTAACCAATACTAACCAGAGGTGTAAACAGATCAGACGAGTCCAACTAAACACTCTTTAATAATTAACACTTGGTGGCACCTGCTCGGAAAGAGTAATTCCATTTCCTATTGTACTGAGTGTTTGCTTGGGGTGAGCTGTAATtgagaaaatatatttatatttatttatatttcaaactATCAATAGGAACTTAAAATGATGTTGTCCCTATTCTAAAGGGGTAAATGTGGAGGAATCGGAGCATAGTGCCACAGTTTTGAGGTTACAGGAACACTAGTGTAATATgaaactgtttatattttaagaaCTCTCCAGCAGGATTCTTGTTAAAGCATTTTAGAGGAATGACAGTGCAGGCAGACAATGGCGGAGAGATGGCTGTGGACGTTAGTGCCATGGAGAGGAGGCTGGAACCTGCGCTCCAAAGCGCCTGGACAAGaGGAGGAACGCCATGTTAGAGCCAATGACCGTGACTACAATGAGAAGTTCAATTACGCTGACAATCACATTAAGACAGCAAAATATACCTTCTATACCTTTCTACCCATTAACTTGTTTGAGCAGTTTCAGCGGTTTGCCAACGCATACTTCTTAGTTCTGCTTATTCTACAgCTAATCCCGGAGATCTCCTCTCTGTCCTGGTTCACCACTATTGTGCCTTTGGTGTTGGTACTGACTATCACCGCTGTGAAAGATGCTACTGATGACTATTTCCGCCATAAAAGTGATCAACAAGTCAACACACGCCAGTCTCAGGTACTCATCAAGGGAATGCTACAAAATGAGAAATGGATGAATGTTAGAGTTGGAGACATTATAAAACTTGAGAACAACCAGTTTGTTGCGGCTGATCTGCTCCTGCTCTCCAGCAGTGAGCCCTATGGGCTGTGCTATATTGAGACAGCGGAGTTAGATGGAGAGACAAACCTGAAGGTGCGCCAAGCTTTGACTGTAACCTCAGACCTCGGAGCAGACGTTGCCAAGCTTGCAGAGTTCGATGgAGAAGTTATATGTGAGCcgcctaataataaactggaTAGATTCACTGGGACTCTGTACTGGAAAGACAATAAATATCCACTGGACAATGAGAAAATGCTGCTGAGAGGGTGTATGCTCAGAAACACTGAGTGGTGCTTTGGCCTGGTGATCTTTGCTgGGCTCCAAACTAAGCTGATGCAGAACTGTGGGAGGACGAAATTCAAAAGGACCAGCATTGACAAGTTGATGAACACTTTAGTACTGTGGATCTTTGGATTCCTTATCTGCATGGGGATCATTCTGGCTATAGGGAACACCATCTGGGAGCAAAAAGTTGGGAAAAACTTCTGGGCATACCTGCTTTGGGATGAACTACTAAGCAGTGCTGTCCTATCCGGATTCCTGACTTTCTGGTCTTACATCATCATCCTCAACACTGTTGTTCCCATCTCTCTTTATGTTAGTGTTGAGGTACTGCGTCTAGGTCATAGTTATTTCATAAACTGGGACCGCAGGATGTACTATAGTTCTAAGGACACTCCGGCTGAGGCAAGAACCACCACCCTGAATGAAGAGCTGGGCCAAGTGGAGTTCATCTTCTCAGATAAAACAGGAACCCTCACTCAAAACATTATGGTCTTCAATAAATGCTCCATCAATGGCAAGACTTATGGCGATGTATATGATGAGTTTGGACACAAAGTGGATATCACAGAGAAAACACCATGTGTGGATTTCTCCTTCAACCCGCTAATGGACAGGAAGTTTCGTTTCTATGACAGCAGCCTGGTGGAGGCCATTAAACTGGAGGAGCCGTTGGTGCAGGAATTTTTCAGGTTGCTAGCTCTGTGCCATACAGTCATGCCTGAAGAGAGGAGTGAAGGGGAGTTGGTGTATCAGGCTCAATCACCAGATGAAGGAGCCTTGGTTACTGCAGCTCGCAATTTTGGCTTTGTATTTCGAGCCAGAACACCAGAGACCATTACCCTGTATGAGATGGGCCAACCTGTCACCTACCAGCTTCTGGCTATACTGGATTTCAACAATGTCCGGAAGAGAATGAGTGTTATTGTGAGAAATCCAAAGGGGCAACTGAAGCTTTACTCTAAAGGAGCTGACACAATAATTTTTGACAGGCTTGACCCATCCAATGATGACCTTATGTACACTACCTCAGAACACCTTAATGAGTTTGCCGGTGAGGGTTTGAGGACGTTAGCTCTGGCCTATAAGGATTTGGATGAGGACATGTTTGATGAGTGGATGAAGAAGCTGTTGTTTGCCAGCACAGCACTGgaaaacagagaggagagactTGGGGCTCTCTATGAGGAGATAGAGCAGGGTCTGATGCTTCTTGGAGCTACAGCCATAGAAGATAAATTGCAGGAAGGAGTGCCAGAAACTATTAGCTGTTTGACCCTGGCCAATATAAAGATCTGGGTTCTCACTGGGGACAAACTAGagACAGCGATGAATATTGGCTACTCCTGTAACATGTTGAGAGATGACATGAATGAAGTGTTCATAATCTCAGGTCACACCACGCTTGAGGTTCAGCGGGAGCTGAGAAATGCCAAAGAGAGAATTATGGGTCCTAACAAAGAGAGGTCCACCAGTGGCCAAGATGTGAGAAAGACTGATATGTATGCCAGTGACTCAGTGTTTGAGGAAACCATTATTGCAGAATATGCCCTTATCATTAATGGACACAGCTTGGCCCATGCACTGGAGGCAGACCTGGAGCAGATCCTATTGGAAGTGGCCTGCTTATGTAAGACTGTGATCTGCTGTAGAGTAACTCCTCTGCAGAAAGCTCAGGTGGTGGAGCTGGTCAAGAGGCATAAAAGAGCTGTTACCCTGGCCATCGGGGACGGAGCCAATGACGTCAGCATGATCAAGACGGCCCACATTGGTGTGGGCATCAGTGGGCAGGAGGGCATGCAGGCTGTTCTGGCCTCAGACTACTCCTTTGCCCAGTTTCGCTACCTGCAGCGCCTCCTGCTGGTCCACGGCCGTTGGTCTTATCACCGCATGTGCAACTTCCTCTGCTACTTCTTCTACAAGAACTTTGCTTTCACGCTGGTCCACTTCTGGTTTGGGTTTCTGTGTGGCTTCTCTGCACAAACTGTGTATGACCAGTGGTTCATCACCCTGTTCAATATAGTCTACACATCTTTGCCTGTTCTTGCCATGGGCCTGTTTGACCAGGATGTGAATGAGCAGTACAGTCTGCGCTACCCTAACTTGTACCAACCTGGGCAGCTCAATCTCTTGTTCAACAAGCGGAAGTTCTTCATGTGCACCATCCAGGGCGTGTACACTTCATTTGTCCTCTTCTTCATCCCCTATGGGGCTTTCCTGTGTGCTGTGCGAGATGACGGCTCCCACATATCCGATCAGCAATCctttgctgttactatagcaacctCACTGGTCATTGTGGTTAGCGTCCAGATTGGTCTTGACACAAACTACTGGACTGCTGTGAACCACTTCTTTATAGGGGGTAGTCTGGCCATGTACTTCGCCATACTGTTTGCAATGAACAGTGACGGCATCTTCAGAATATTTCCAAACCAGTTTCCATTTGTAGGCACAGCACGTAACTCTTTAAATCAAAAAAGTGTGTGGCTTGTCATTCTCCTTGTGACAGTGGTGTGTATAATGCCGGTTGTGGCCATACGCTTCCTCAGGACAGATCTCCATCCTACACAAACTGACAAAGTGCGCTTGCTCCAGCAGGCCAGCAGGAGGCAGGGGCCTCAGGAGCAGAATCTGAGACGAGTGCGCAGGACCAGTTCCCGCCGCTCTGCCTACGCCTTCGCCCACCAGCAGGGATATGGAGAGCTCATTACCTCTGGCAAGAACATGAAGGTGCCCACTTCCTCCACTTCAGCCCTCCCTGGCTCATCTCCACAGAGAAGTAAAAGCAGTACCAGTTGGATAAAGAACATTGCAAAAAAGGAAACGGACATGAACCATGCAACAGCTGCTGAAGAGACTTTATATTCTGGAGTTACAGAGCACCCCAGACGTGGAAGCAAGCACAGCCTACAGACACTATACACAATCTGATGGCAGACAAATACAAAATGTAGGGCAAGCTGAAAAATCCCAGCTCAGTGAAGGTAAGGGGATTTCTCTGTAGTCATGTCCAAAAGCAGGGAGCAGCACAGCACCAGGTGAACTTGTAGGTACTCTATGAAAAAGTTGTGCTAGatacatgattttatatatatatataaatgactgCAATCTGAATTGTTCATATTATCCCAGTGTGATATAAAATACAGAACCCTCCAGGTGTGCTCAGTGCTACATGGAGTACAGCTATACGGAGAGCAGTTCCGGGTGGTCAAACAGCAAAAGACATGCACATGGGATGGCACTAAAACAAAAAGAGGCATTGCACAGGAGAGACTCCAAAGAGCAAGCATAATGAAGCACAGATAAGACTCCTTACCTTCCTCAACTAATTTCCTTGTTCATGCAAATGCACTCTGTTCTCTTGGTGCACTTTCATTTAATTGCGAGTCACTGACTCGGAGAATGCGCTAAATAGAGTTTCTACTCTATTtagttttcatttaatttcccCAACTGAGTGAGACAagcatgcaaatgcagaaatgttACTTCAGACAGCCAGAATTTCTGGAGAATTTCTGCAAAGCCCTTCATATGCTTCCAGTATACTGCAGAGCAATTGGTGTTAATTGCGTGCATAATTTCAATGCAATTATCTGAGATACTGGTAAACTACAGTCCTCTCAGAATTTAGATTATTTATAACTAGTTGCAACACTATGGCCAACTTGAATGTTTTAGTAGACACTTACAGTCTCACAGTCTCAAAAGAAAGCTTTTGAAAGCAATGTTATTATTTAAGACAGGGTTGAAGGAGTTTACACATATTGATACAATAATACCTCTACTTGAATAATTGTAATGCTTAACTGACAACTTGTTATATTGCTCGATTTTGATTCATTTCTAACTTTGCtaaattcttttaaatataCATCGGATGTAGTAAATGTTTGCACATGTTACATAATACGCTTAAAAGATCTTGAGAGCGGATCATCGAACATTAGTAATCAGAAATAACCCTACTGCCCTATGACCTTTTTAGACTAGAAATATAGATTGCTTGTAAATTATTCTTAGCATTGCTAGAGCACAGCATGGGCTGATGGTCTTTGTTCTGTCATTAAGGAAAAAAAGCTTAGCCGCACCACCATTTTTACATACTAAACCACCCTACGTGTGCATACActgtttatttctcattataCCTCTCTAGTGCGCATATACCACGTTGTAGTCGGCATCAGGTTTGCATGTAGACCGCAGAATGATGAAAAGAGCAAAAGTGCAGAAGATTAAGGTTATAGTTCAGAGGCTACACAGCTGTGCCTTTCATCCCCCTCCACCGACAGGTAAAGCTTTTACTGTGTACAGTAACTACACTGTCTACAGAAAGGGTGACAAATTGGGCATTCGTTTCACTGTCCTTTTACAAAAGGAAATATTTGTGCCTTTTTGATTTGACTCTCAGTAAAAGAAGTATATTTTTAAGTTTTGTCCAGTATTTATCTCTCTGCCATCAAGgccttgtttgtgttttttttttccatgttacaAACTCTGCAAATACCTGATGTGCAGAATAACATAAATCAACATTTTATGTTACACtgatatgtattttttttatttaaaacaatgaaaattatAGGGAGTTTTGTTTATATGGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177846 lncRNA upstream 10285 17253667 ~ 17255337 (+) True G150152
TU177842 lncRNA upstream 28676 17236641 ~ 17236946 (+) True G150148
TU177389 lncRNA upstream 691750 16540599 ~ 16573872 (+) True G149729
XR_004578660.1 lncRNA upstream 791394 16460380 ~ 16474228 (+) True LOC117597920
TU177373 lncRNA upstream 816482 16446039 ~ 16449140 (+) True G149723
TU178004 lncRNA downstream 146217 17430143 ~ 17434377 (+) True G150261
TU178009 lncRNA downstream 162323 17446249 ~ 17446460 (+) True G150265
TU178012 lncRNA downstream 172994 17456920 ~ 17457135 (+) True G150268
TU178163 lncRNA downstream 418628 17702554 ~ 17702758 (+) True G150407
TU178372 lncRNA downstream 548840 17832766 ~ 17840449 (+) True G150590
XM_026919583.2 mRNA upstream 129587 17130857 ~ 17136035 (+) True isl2a
XM_034307203.1 mRNA upstream 152019 17061938 ~ 17113603 (+) False tmem266
XM_026918648.2 mRNA upstream 152019 17061939 ~ 17113603 (+) True tmem266
XM_026918649.2 mRNA upstream 152019 17061939 ~ 17113603 (+) False tmem266
XM_026918606.2 mRNA upstream 213411 17046002 ~ 17052211 (+) False lactb
XM_026918795.2 mRNA downstream 7461 17291387 ~ 17298220 (+) True cops2
XM_026919717.2 mRNA downstream 14815 17298741 ~ 17315242 (+) True cep152
XM_026919718.2 mRNA downstream 14815 17298741 ~ 17315242 (+) False cep152
XM_026919719.2 mRNA downstream 18925 17302851 ~ 17315242 (+) False cep152
XM_034307110.1 mRNA downstream 32747 17316673 ~ 17322858 (+) False zgc:101540
trnav-aac_18 other upstream 1224375 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1443031 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1445466 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1446049 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3444960 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 550311 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 550311 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 550311 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 1391084 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 1437669 18721595 ~ 18724686 (+) True urahb

Expression Profile