RNA id: XM_026918806.2


Basic Information

Item Value
RNA id XM_026918806.2
length 1405
RNA type mRNA
GC content 0.44
exon number 1
gene id c9h11orf96
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18652771 ~ 18654175 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTTCTTGCTCATGTTGAAATAACCCAGATACAGAGACACTAACAGCAGAGCATCTAAGAAAACACACTGTGCTGCCCAGCAAGGCAGAATCCAAGGACTTCTGACGCACTAGCTTTTGTGTAGCCAGAAGGGAAGCTTGGTGGACTGAAGATTATCACCACATGAGGACATAAAGCATTTTGAAGTGTGCTGCGATTTGGGACTGCTGCAATCTGTGAGTACACAAACTCTTTTGGAGTGGcaagaggaaaaacagagaaaattcGCTCTGGAatctttaaaaagtgaaaagaggagagaaggagaagcaACTAGTGCACCTCAGAGGATAAACACACAGCAATTCCCATCTCCAGCGATGACTGTACGTCCAGTGGAGACAGTGGGTTTCCCTATGCTTCCTGCTCACTTGATGGCTTCTGCTATGGAAGAGTTCCCACAGCAGCTCCCTGTACCCAAGGGCCCAGCTCGGGGCCGCAGTCGTCCCAAGCGACCGCGAGAGACCCGCTTCAAAACGCAGCCAGTGACCTTTGCAGAGATTGCAGAAGTAGAGGAGGAAGGAGCTTCGCCCCTGGAGGAGGAGAGAGCAAGGCGCTCCTTCTTGCAGTCACTGGAGAGTCTAAGGAGGAGCACACAATCCCTGCAACACACAGGAACCACACAGAGCGGCAGAACCAGCACACCAACACAGGCTAGCTTGGACTCAAGTGACTCAGACTCAGCccaatgagagagaaagagagagagagaaagagagagagagagagaaagagagaaagagagagagagagagatctgtctTCTACATGTGATCTGTTCTTCTGTTGTAAAGCTTACTTACTGGACTGGTCTCCAGTGTGCTAAGCTCCATGCACATAACCTCTTGAAGCTtactttgcagctataacataGTTACAGTATTTTATACACATACTTGTGTCACTCCAGTCAAGCAACGGCAAGCTGACTAGCTTCTGCTTCTTACTTGTAGCGTTTCAAATTTTCTAACTACTTAAATACCTTAAATATTCCAGAAATATTCGCTATACTTGAGGCCTATTACTCATTGTGAGGTTTGAAATGTTGATATGTTCTTGTTACAATTCCACTGGACAAGACAGATGGTTTATCACTGTTTATCTTTGCCACTTTATCATGATCGTGCAGTCAAGTCATTGATGGAAGAACTGAATCTGCTCTGTAGACACCACACTCGGAATAGGAGCTTTGTTCATATGACTTGAGTATGCCAGAGTAGTACATCTACTAATGAACTCAGATGTTTATCTTATTAATAACAGTGAAATTAGAAATGTTTTGTTGACACTGTCGGCTTGTAAggtcacaagaaaaaaaatgaaattatgtcTTTATACtattgttttacttttactatctttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578835.1 lncRNA upstream 31950 18601539 ~ 18620821 (+) True LOC113530068
XR_004578834.1 lncRNA upstream 31950 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA upstream 31950 18602145 ~ 18620821 (+) False LOC113530068
XR_004578836.1 lncRNA upstream 31951 18601568 ~ 18620820 (+) False LOC113530068
TU178803 lncRNA upstream 100634 18551893 ~ 18552137 (+) True G150958
TU178948 lncRNA downstream 93652 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 291100 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 300874 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 455668 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 572474 19226649 ~ 19227893 (+) True G151395
XM_034307276.1 mRNA upstream 7065 18636689 ~ 18645706 (+) False alkbh3
XM_026919132.2 mRNA upstream 7065 18636689 ~ 18645706 (+) False alkbh3
XM_026919133.2 mRNA upstream 7065 18636774 ~ 18645706 (+) False alkbh3
XM_034307274.1 mRNA upstream 7065 18636793 ~ 18645706 (+) False alkbh3
XM_034307273.1 mRNA upstream 7065 18636813 ~ 18645706 (+) False alkbh3
XM_034307402.1 mRNA downstream 5466 18659641 ~ 18672052 (+) True ticrr
XM_034307404.1 mRNA downstream 5467 18659642 ~ 18672052 (+) False ticrr
XM_034307403.1 mRNA downstream 5467 18659642 ~ 18672052 (+) False ticrr
XM_026919904.2 mRNA downstream 5467 18659642 ~ 18672052 (+) False ticrr
XM_026919693.2 mRNA downstream 20835 18675010 ~ 18683428 (+) False rfwd3
TU178368 other upstream 810236 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 810236 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 810236 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2611524 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2833198 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 20835 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 67420 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 422420 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 466989 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 606449 19260624 ~ 19263893 (+) True G151401

Expression Profile