RNA id: XR_004578670.1


Basic Information

Item Value
RNA id XR_004578670.1
length 2454
RNA type misc_RNA
GC content 0.46
exon number 21
gene id LOC113529564
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15807990 ~ 15822591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAAACCAGCTGAGTGCTTGAATAGCGCATTTTCTCAGTAATAAGACACTCTTTGTTTAGTAAGCTAACGCACCAGCCTTTAACTCGTACCCGAAACGTGACGCATTCCAGCAAGCCAACAGCTGACATTCCAATCATAGCAGATACAgctctcattcactcactcactgaagAAGTGCGGAAGTAGGCACTATTTAGGGTAAGTGTTGGCCACAATGGGTCAGACTTGAAGTTCATGCTGAAGGAAGAACAGCTGTGCTCCAGGACACTGGACAGTGCGCGCATCTGGATTCACCCTCAGTGATGGCGCGCAAAATTAATCACAGGAGACAGGGAAGCATTGAACTGTTGGAAGCTATTGGGGTggtgaaaaaggaaaatggcACTGGGAGCCTTTCTATGCTTCCTTTGCAGTCCCCAAAGTCCTTCGACTATGTTCTGGTTGCCCAGGAAATGGGTGAAGATACTGGAAAAGAGAGCTTCAGGAAGAAGAGGGATTTCATCAGAGCTTTGAAGGACAAGAATTTACAgataatgAAAATTACTGATGATGATAAAGTTTTTTATGGGATCACTGCCCCAAAAGAGATCTTCGACACATACAGACATCTGCTTAAAGTGTCTGATGCATGTAACTGGAGCTGTGAGCAGCAGGGGAATATACCGCAGTCAACAAGGATACGGATAGTTGACTACATTCTGCACCACACCAGCATAGACACTGATGGTGTTCCAGAGTATCTGTCAGACCTGATTAAAGACAATGTATTTCAGGCTCAGTTTTGTCTTCATGAGAAAGAGGAACTGAAAGAACTGAGGAACAGTTGGGCTAGATGGACTGCCTGTTTTACTGGACAGCCCATAACTGATGTAAGGCACTACTTTGGAGAAAAGGTGGCTCTGTATTTCTTGTGGCTGGGCTGGTACACATTTCTGCTCATCCCCGCTGCTCTGCTGGGGGTCATAGTCTTCCTTTATGGCCTATTTTTCTTTAAACCCAACCCTCTGAtACAGGAGGTGTGTGAATCAGACACTATAATGTGCCCGCTGTGTGATAAGGGATGTAAGGTCTGGCGGCTCTCTGATACATGCACATATGCAAAGGTGAGCACATTGTTTGACAATGAGGGAACAGTCGCATTTGCTATGTTCATGGCAGTCTGGGCTACTGTGTTTCTAGAGTTCTGGAAACGCCACACAGCCTCATATgtctgtgagtggaaagtttTTGACTGGTGTGAAGAAGAGGAGGAGCTGATACTGGAGATAGTGAATAATCCTAATTGCAAGTCGATGAAGTACAGCCACTCATACCTGCGCAGTACACTAATAATGGTGTTAATGACGCTCATGTTGCTGCTGATCATTGGGTTGGCACAGGCCCTTGTGGTGTTCAGGGTAATAGCCAGTGTAGAGTTTGCTAAGCACACAAAATGGCCTTTTCTTTGTGAAAACAGCAGCACAGTGGCTTTCATGCTCGGAGCAGTGCTGCACTACCTCACAATAACCATCATGACTTGGGTCAATCGCAGAGTGGCCCTGAAGTTATGTGAATTAGAGAAGGTGCGTTCACATGCTGCTGTTGAGAGGAGCTTCACAGTGAAGATGTTTACCTTCCAGTTCTTCACCCTTTTCTCCTCACTCATATACACAGCATTCTTTCTTGGCAGGATAAACGGACATCCAGGTGGATACGTGAGGATAGCTGGAATCTGGAGATTAGAGGAGTGTCACCCTAGTGGATGTCTGACTGACCTGTTCATTCAGATGGCCATCATCAtgctgctcaaacagatcatcAGCAATGTGTTTGAGTTTTCAGGCCCCTGGTTCAGACGGTGGCTGAAGAGGCGACAGAGTCGGAAGCTGAGGAAGAAGGTTAGACAGTGCTCAGCGAAGCACTGTATGGAGGATACAGGAGGTGCTAATCTGTGTGACAACTGTAAACTTAAGGACTTGCTCTGGAACTTTGACCTTAATAATGTGGACTCCTTCAGCCTCTTCAATGAATTCCTAGAAATGGTACTGCAGTTCAGTTTCACCACCATCTTTGTAGCTGCATTTCCTCTGGCTCCTCTGCTCGCTCTGCTTAACAATATCATTGAGATCAGAATGGATGCCATTAAAATGGTCAGTCTGGAACGAAGACTGGTGCCCAGGAAGACTAATGACATAGCATGTGAACTTTGTAGGTGTTTGGACAGATGTACTGGAAACAATTGGTGTGCTAGCTGTCATCGCCAATGGTCTAGTCATCGGCATATCCTCTGATTTTATCCCTCGGTTGGTGTATCGCTACCGCTATGGACCCTGCGCTCATTCCAATGCTAGTGGTGATGACATGTGGTGGTGATGTGTAAGTGCATCGCAGGGTGGTTTGTCCCCAGTTCTCCCTTAGAGGTTAAAAATACAAGGCTACAAGACAAACTCGGAAGACTGAAAGAAGAACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176815 lncRNA upstream 53078 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 82899 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 96073 15711013 ~ 15711917 (+) True G149248
TU176631 lncRNA upstream 155306 15563306 ~ 15652684 (+) False slc5a12
TU177010 lncRNA downstream 204688 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 207451 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 434528 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 508100 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 518434 16338590 ~ 16341963 (+) True LOC117597940
XM_026918674.2 mRNA upstream 55464 15751139 ~ 15752526 (+) True fancf
XM_026918680.2 mRNA upstream 83124 15721292 ~ 15724866 (+) False svip
XM_026918681.2 mRNA upstream 84271 15721278 ~ 15723719 (+) False svip
XM_026919330.2 mRNA upstream 155359 15644987 ~ 15652631 (+) True slc5a12
XM_026919331.2 mRNA upstream 173000 15631055 ~ 15634990 (+) True si:ch211-87j1.4
XM_026919874.2 mRNA downstream 12023 15832179 ~ 15841507 (+) True sigirr
XM_026919672.2 mRNA downstream 54707 15874863 ~ 15882172 (+) True hexa
XM_034307515.1 mRNA downstream 67951 15888107 ~ 15890739 (+) True nr2e3
XM_026919786.2 mRNA downstream 67951 15888107 ~ 15890739 (+) False nr2e3
XM_026918758.2 mRNA downstream 71497 15891653 ~ 15895454 (+) True stoml1
trnar-ucg_5 other upstream 1987328 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 2032807 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2454737 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2890736 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4504044 11295128 ~ 11303946 (+) False hrh2a
trnav-aac_18 other downstream 221019 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2014081 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 2014081 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 2014081 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2854854 18675010 ~ 18683428 (+) False rfwd3

Expression Profile