RNA id: XM_026918890.2


Basic Information

Item Value
RNA id XM_026918890.2
length 1722
RNA type mRNA
GC content 0.43
exon number 2
gene id fbxl22
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16061088 ~ 16066983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaaaagcTCTCTAGTTGTTCCTTTGAGTGTTTTGTTTCCACCATTGATATTCCCTGAACACTTTCCTATCTGATGTACTTCATGTGCAGTGCTCaggaaataaatgcaaaattggGTCACAATGTTCAGGTTTGGCCACTAGCACATGTtctttttgtgatgtttttgaaGATGGATGTGTAGATCAACATATATCAGGAAGTGAAACCAAGCTTGGTATCGAACTCTGGGAATCTTTCAAACCAAATTCTCACTTCCACCCACAGcctgagtgagtgaatgtgaaaGTCCTGCCTTGATTTTCCCTTCAGCTGTGAATGATAAACACAAGCCACTGCTGTCCAAACATCTGCCCCAACAGATGGACtagtactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatactttacacatttccatttttgacTTAGCCTGCTGTTGTCCtctcaaaataacttccattcTTCACGACCTTATATGTGCACGGCTACTGTGTGAAGAAGAGCCTGCCTGCAAAGGAATCATGTATCCAGGCCTTGCAGAGCAGACTGCATCCCCAGCAACTGCTGTTCCTCTGTGTGTATCAACAGACTAGATCTCAGCCCAGCATACAAAGGCCTGTTTGATGCTTTCACTCTCTTTGCAATGCATCTCACAAATCTTAATCAGGAGTGCCTGCTtcatcttttttcattcttgGATAAAGACAGTCGGCAGAACCTGTCTCTGACCTGCAAGCGTCTCCGTGTAGTCTTCCTGGACCCTCAGCTCTGGTCTCTGCTCAACTTTTTCTCTCCTAGCGAACTTACGAGGAACAACTTCATCCTTGGCCCCTTTTTGAGGTACCTAAATATATACTGGCATTCCAGCAGGGTCAAAGTGTGTAATATTGAAGACTATAAGAAGACGATGTTCCAGAGGGACCTTTGCAGCAAGCATGCGAGCTTGGTCAGCCATTTCCTGGAGCGTGTCTGCCACATGTGTCCAAACTTGCTGTCCCTAACCCTTTCCGGTTGTGGACACATCACAGATGGAGACGTGATCAACGTGCTGTGCAGCTGCAGGCGACTGCAGCGACTGTGTCTAGAGAACTGCTGCCGTGTGACGGACGCTGTGCTGCAGGCAGTAGTAACCCACGGAGGCAGACTGCAGGAAGTGAGGTTGGATTTCTGCAggaatgtaacacacacaggcctGCAGACTTTCAGAGAGAAGAGGCCTGCAGTTCGGCTAGTTGCTGAGCGGAGTGCAGGGATGATACCTGACACTCCGCCTGGGGAAAAACTGCACAGCAGGAGGGCACTGCAGAAAGTCCTTATCTTTTCCTGAGAACCAAGGATGGGGATGGGAAGACGAGGTGTCTTCTGAGACCTGACAAATCATAGCAAAgtgatctatttatttattattattattattattattattattattattattgttattattattattttgaggtTGAAAAGGGGGCATTGTGTTCaaattacttattatttttcatttttgtttttatttgaatttttattacTGAGGTATCCAAGTCATTCAAAAATGGTGTGAATTTTCTacaatttttttctacaaatctgtatttaatataattcaattaaaacttttttttaaacaaaagtgtctTATTTTTTCACTTGAAGCATGCAGTGAAGAGTCGACTCCTTTAAATAGGCCTAATATAATCCACAATGTTGAGAAT

Function

GO: NA

KEGG:

id description
K10288 FBXL22; F-box and leucine-rich repeat protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177011 lncRNA upstream 33069 16027607 ~ 16028019 (+) True G149428
TU177010 lncRNA upstream 34576 16024844 ~ 16026512 (+) True G149427
TU176828 lncRNA upstream 242720 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 306176 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 335997 15721348 ~ 15725091 (+) True svip
TU177169 lncRNA downstream 187701 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 261273 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 271607 16338590 ~ 16341963 (+) True LOC117597940
TU177372 lncRNA downstream 372723 16439706 ~ 16440054 (+) True G149722
TU177373 lncRNA downstream 379056 16446039 ~ 16449140 (+) True G149723
XM_026919968.2 mRNA upstream 920 16049084 ~ 16060168 (+) False usp3
XM_026919969.2 mRNA upstream 920 16049391 ~ 16060168 (+) True usp3
XM_026918866.2 mRNA upstream 12934 16045575 ~ 16048154 (+) True si:dkeyp-73b11.8
XM_026919794.2 mRNA upstream 46933 16009837 ~ 16014155 (+) True neil1
XM_026919523.2 mRNA upstream 52265 16005670 ~ 16008823 (+) False commd4
XM_034307478.1 mRNA downstream 26089 16093072 ~ 16106147 (+) True LOC113529940
XM_026919553.2 mRNA downstream 26777 16093760 ~ 16106147 (+) False LOC113529940
XM_026919736.2 mRNA downstream 103261 16170244 ~ 16174834 (+) True si:ch211-112g6.4
XM_026919649.2 mRNA downstream 135792 16202775 ~ 16206450 (+) True lrrc61
XM_026918916.2 mRNA downstream 142795 16209778 ~ 16219634 (+) False idh3a
trnav-aac_18 other upstream 19841 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 238497 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 240932 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 241515 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2240426 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1767254 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1767254 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1767254 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2608027 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2654612 18721595 ~ 18724686 (+) True urahb

Expression Profile