RNA id: XM_026918914.2


Basic Information

Item Value
RNA id XM_026918914.2
length 1937
RNA type mRNA
GC content 0.43
exon number 8
gene id dnaja
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16231335 ~ 16235381 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCTGCAGCTCCTGCGCTTATATATAGGCGCAGCGGCCATCTTCATTCAGTCACAGCAGCACCATCTACCCGGCACGCTGTAAGAACACAGGGAGCAAGGCAATTTCTCAAGGAAACAAATAGTCTGGCCAAAAATGGTGCGAGAGACCGGCTACTACGATATTCTCGGAGTAAATCCGAAATCCTCTGCGGATGAAATCAAGAAAGCATATCGAAAACTGGCCCTGAAATACCACCCGGACAAAAATCCAAATGAAGGCGAAAAATTCAAACTCATTTCACAAGCCTATGAAGTCCTGTCAGATCCTAAAAAGCGAGACTTGTATGACCAAGGAGGTGAACAGGCCATCAAAGAAGGAGGCATGGGTGGAGGAGATTTCTCATCTCCTATGGACATCTTCAACATGTTCTTTGGTGGTGGAGgaagaacacagagagaaaggagagGGAAAAACGTGGTCCACCAACTTAGTGTCACACTTGAAGAAATGTACAGTGGTTCAACCAGGAAACTTGGTCTCCAGAAGAATGTGATCTGTGAGAAATGTGATGGTTATGGAGGAAAGAAAGGGGCCCTTGAGAAATGCTCTAATTGCAAAGGTAGAGGAGTTCAAATCCAGGTACAACAGATTGGACCAGGAATGATTCAGCAGATTCAGAGCATGTGCTCAGAATGCCAGGGGCAAGGCGAGAGGTTCAGTGCCAAGGACCGATGCAAGAACTGCAATGGGCACAAAGTGGAGCGCAAAAAGAAGATTCTTGAGGTCCACATTGACAAAGgTATGAAAGATGGCCAAAAGATCACATTCCATGGAGAGGGTGATCAGGAACCAGGCCTGGAACCTGGTGATGTCATCATTGTCCTGGACCAAAAGGACCACCCTGTATATCAGAGGCATGACGACAACCTGATTATGAAGATGCAGATTAAACTAGTTGAGGCCCTCTGCGGGTTCAAGAAGACAATATGCACACTAGACAACAGAACGCTCATCATCAACTCACCTCCAGGtcaagtaataaaacacaatgacttAAAGTGTATTCAGAATGAGGGCATGCCTGTGTACAGAGATCCATATGAGAAAGGACAGCTCCTCATTCAGTTTGAGGTTGAGTTCCCAGAGAAACACTGGCTTCCAGAGAACATGTTTTCCCAGCTAGAGAGACTGCTTCCCAAGCGAGATGAGGTCATGCTGACTGATGATATGGAAGAGGTTGACCTCTGTGAGGTGGACCATGATTTCCAGCGGAGGAGGTACAGTGGAGAAGCATATGAAGAAGATGAGGGTCCCAGAAGCCATGGAGTACAGTGTCAGACTCAGTGAAACTCCTATTCAGTGCATCTATTAATGCAGCACCTTTTTCTGTGTAAATCTGATATCAGAATTGTCAAATTTGTGAGTGCACTCCCAATTTGACCTTTCATTGGGTAGTTTGTGATCAAGATGTAATTTAATTGGATCAAAACTAAAAAACAAGTGctctcaaagtgctttattcaCCTAGAGATTTCCCTTCTGTTGAAACCTGTTTAAGTGGAAAGGACAGGTGCTGACTTTAATGGTAAAACACCTCCGAGGATCACTATTGATGTGTATTCATGCAATCCGACATGGTGGAAAATTACTGTATAATCAGTATGTTGCTTGATTTGCCCAAgaagtctttttttgtttgcttgtttgtttaattgtacTACTTACAGTAGCATGTACcttttgaatgtgtttgtgggtgtgtgcatTCTGTTCACTTTTATATGAGCcctcttatttatttctaactgtaatttgcttttcttttgtctCACCCACATGAAAAAGCTCAATACAGAAGAAGGGTATCTGTATGCTTTCTATGAAGGTAACACCCCTCACAATTCACCTGTGTAtcaatgaaaaatgtgttttctcaaataaaacatgtcatgtaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09502 DNAJA1; DnaJ homolog subfamily A member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177011 lncRNA upstream 203316 16027607 ~ 16028019 (+) True G149428
TU177010 lncRNA upstream 204823 16024844 ~ 16026512 (+) True G149427
TU176828 lncRNA upstream 412967 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 476423 15754665 ~ 15754912 (+) True G149268
TU176798 lncRNA upstream 506244 15721348 ~ 15725091 (+) True svip
TU177169 lncRNA downstream 19303 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 92875 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 103209 16338590 ~ 16341963 (+) True LOC117597940
TU177372 lncRNA downstream 204325 16439706 ~ 16440054 (+) True G149722
TU177373 lncRNA downstream 210658 16446039 ~ 16449140 (+) True G149723
XM_026918916.2 mRNA upstream 11701 16209778 ~ 16219634 (+) False idh3a
XM_026918915.2 mRNA upstream 11701 16209828 ~ 16219634 (+) True idh3a
XM_026919649.2 mRNA upstream 24885 16202775 ~ 16206450 (+) True lrrc61
XM_026919736.2 mRNA upstream 56501 16170244 ~ 16174834 (+) True si:ch211-112g6.4
XM_034307478.1 mRNA upstream 125188 16093072 ~ 16106147 (+) True LOC113529940
XM_026919443.2 mRNA downstream 6867 16242248 ~ 16251075 (+) True rab8b
XM_026919054.2 mRNA downstream 61212 16296593 ~ 16311059 (+) True klf13
XM_026919260.2 mRNA downstream 165461 16400842 ~ 16421690 (+) True LOC113529796
XM_026919261.2 mRNA downstream 187242 16422623 ~ 16424388 (+) True gcnt3
XM_026919602.2 mRNA downstream 263143 16498524 ~ 16500108 (+) True foxb1a
trnav-aac_18 other upstream 190088 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 408744 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 411179 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 411762 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2410673 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1598856 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1598856 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1598856 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2439629 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2486214 18721595 ~ 18724686 (+) True urahb

Expression Profile