RNA id: XM_026918976.2


Basic Information

Item Value
RNA id XM_026918976.2
length 3568
RNA type mRNA
GC content 0.42
exon number 10
gene id bnip2
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16443455 ~ 16458395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacttttgttgttgttccttgCAGTTTCGTTGTGGAGTCTTAGGAAGAGTCGCCGCTAATCATGCACTGGAGATAGTGTCAGTGCGGCTCGTGTTCTGTCCAGCAGTGAATAATGTCGTAAAGATAAGAGCTCATTTGTGGAATCTGGGTGATATTTTGGCCGCATGGGTCTCGGAGAGCTTGCTGTTCAGTGTGCTGTAAGTGTCAGTTCCTGTCCGTCAGCAGTCCAGCTGAGAGCTAGCTGATTAGCTGAAGCGGCGTCAACACTTCTGCTGCAGGAAGGAAGAGACGGAGAAGTAGCTCAACAAAGCCGGCCACTGGACTTTGACTAAAAACGGCGAGTTTCTCATATTATATGACAGTTAGACATGTCGGTTGCTTATTCTGAGTGAGTTAATAGTAAATGTTTACTGGTGAATTCAGTGTTATGGTTAGTTTTTAGCTGGTAGGCCGAGCTGAAGAATTCTTTCCAGCCTGACTCTGATTAGCTAGGCTAGGCTAGGCTAGCTGGTCACACTGGCTTGTTTTGGTCGGGGTGCTGGTGGAGCTTCCTGCACTTCAGCTCttcacttttttcttatttaactcGACTGTCCAGCTCGCTCATGGCTACAGATGCGACCGAGAGTGAAAGCAGCTTGAACCAGACTGACACTAATAACAGGGTGATTAAGGAGAGCAGTGGTGAAGCAGACACACCCAGAATCAGTGCGACGCTGGAAAACAAGTCAGGTCGCGTCGCTGAACAAGGAAGCGATGAACACGCACTGACAGCAGCCTGCACACCCACACAGGCCATGACTTCTGCAGATACTCCACAGGATCCACCTGTCCTGTCCAGTTCGAGAAAACCAGAAGGTGTGCAAGAGGAAAGTTCACATAAAGAGCAAAGTGAGGAGTCGAGACTTATACACAGCAGCGCGCCGGTGACGCTTCCGCACGCGCACTCTGCACTGGAACATAATGGCAGttttgAGCGTCAGGAATCAGTCAGCACTACAGAGGCTCGATTAcgaatggaaggaatggaattCAAAGAGGAGTGGCAAGACGAGGACTTCCCCAGACCACTACCTGAAGAAGGGGAGATTCACCTTGATGATGAACATCTCTTCACCCACACATCTGGAGAGGAAGATTCTGCTCCGAACAGTGGCAAAAACACAAAGAGGAGACTGTTGGCCCCAGATATCAGTCTGAACCTCGATCGTAGTGAGGGCTCTGTGCTTTCTGATGAGCTGGATGAAAGCACAGAGTTAGACCTGGACGGCATGGACACCCCGTCAGACAACAGCAACGAATTTGAATGGGAAGATGATCTACCAAAACCCAAAGGCACTGACGTGCTGCAGAAAGGTGTGGAATCAGTGACCGAATATTCAGCCTATGACGAGCGTGAAGATGGCCGACGCTGGAGGATCTTCCGTATTGGGGAGCAGGACCACCGGGTCGATATGAGGGCCATTGAGCCCTACAAAAGAGTCATCAGCCATGGAGGTTACTATGGAGATGGACTGAATGCTATTATCGTCTTTGCGGTTTGCTTCATGCCTGAGAGCAATCAACCAAACTATAGATACATCATGGACAATCTTTTCAAGTATGTAATAGGCACTCTGGAGCTGCTGGTGGCAGAGAACTACATGATTGTGTACCTGAATGGTGCCACCTCGCGCCGTAAGATGCCCAGTGTGGGCTGGCTGAGGAAATGCTATCAACAGATAGACCGGAGATTAAGGAAGAATCTGAAGTCTTTGATTATTGTCCATCCCTCTTGGTTCATTCGCacactcctgaccatcacaaaaCCTTTTATAAGCTCCAAATTTAGCCAAAAAATAAAGTATGTGTACAGTCTGGCAGACCTTGCTGAGCTTGTGCCAATGGAATATGTGTCAATACCAGAATGCATCAAGCAGATTGACCAAGAAATGCATGGCAAAGGGGAGATGGCAGGTGCAGAGTGAAGTTGAAGAGGAAATTGGGTGGGTTTTTTGTGTCTCTCagctggagggaaaaaaaaaaaaaaaaaaaaaaatttgtgccTTCCAAGACTCTATTGCCTGTTACATGGTGggacttttattctttattgtaTTAGTGTGCCAAACACGAGTTGAAATCTCAATGCTGTGCTTCAAGTATTTTTATAATCTTACACACATAAATTCGGAGTCAGTTGTCATTCTTGTCAGTAATTCCTGTTGCTTCTCCCTGATGTTCAAGGCACTTGGTTTTCAAGTTAGGTGATGCATGTTCTACTacgttacatttaaaatatatttatattcaaatgGTGATAAAGGAGAAaagattaatatatatatatataatttttttctttggacAGTCCTTTATGGTGTTACTTTGACTTGCTGAAATCTCACATCATACCTGTTACTGTTTATTGGTGGAAAACATTTAGATGTTGTATGAGGAAAGTGTTGTTCTCTCCATCTTTGCCTCTTAGGAATGATCCAAAGAAATGGATCATTTCATAAGTTTACTATTATAGTCGCAGATTGTGTTGATCTCTGTACCATACGTTTGGGAAGGGTGTTTCTTGTCTGTTCTGTTCTTGCAAGTAAAATGtccacaatacaaaaaaaaagtcttcctCTTTGCCAGTATGACTATAAGTACCAGTAGTACACAGCAGTTACTTTAGTACAGTATATAATGCAGGTCTTTATGAAGGTAATTGCATTTGGAATAGTTTGACGTTTTATTGCATCAAGACTCTTGATGACCACCAGTTGTCACCAAGCAGTGATGCACTCAgtttgagtctttatttgtaaaaGAATGTACACGTTGTCACAGTTTTGGTAGTTTTCTCAAGTGTGAACTGTTTAACTGCTAGTGATGGTTGATAGTTCCTTTACTTCTGACATGGTCTGACTCTCAACTGTTGATTCAGTTTATTGATTTTAAGGATCCAGTAAAcaagataattaaataaagggTAGATTTTTCGTTGGAGTGATGGTCAATTTATTATTCGCAAGCAGTTTgcagaaaacattaaacaatCAAGTCATCTTAAATCTGGTTGCtatattttaacaattttgacactaaataataaaagtagcACTTTGCTTAATCACCCCTTAATCAGTTTTAGGTCAGGCTCATGTGTTTGGAATTACCCCAGCTATTTCTTCTCAAGTTCATGGGTTTTGTAGTGAAAATGGTAATATTAAAGGTCATTCTCTCACTGCATGCAAGTATGATTTTGCCTGCTTCTGTAGCAATACCTCAAATATTCCAACttttgatttagattttttttctttattgtgtaATTTCTTTCCCTGTGCCTGTCACTAACTGCAGCTAATTATCTTCATCTGTCATCAAAGCTCTCTGTCTTATTTTCTCCATGATGTATTGAAATGTTCTGTACAATGTTGCTGCATGGTTGCGCTACTGAAGCAGCATGTGATAAACGCACATTGGATTGTTCTCTGTTACACAGACCAGACCAATGAATGTACCACCTGTTTGCTGATATTCTGTATGTTTGAAAGCGCAATAATACCAATAAACAAGTACCATTACGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177366 lncRNA downstream 18851 16422666 ~ 16424604 (-) True G149718
TU177254 lncRNA downstream 125529 16309890 ~ 16317926 (-) True G149632
TU177277 lncRNA downstream 187969 16254647 ~ 16255486 (-) True G149649
TU177268 lncRNA downstream 192370 16249161 ~ 16251085 (-) True G149643
TU177252 lncRNA downstream 205347 16233429 ~ 16238108 (-) False G149631
TU177505 lncRNA upstream 2396 16460791 ~ 16461045 (-) True G149836
TU177511 lncRNA upstream 37776 16496171 ~ 16498461 (-) True G149841
TU177528 lncRNA upstream 154589 16612984 ~ 16614416 (-) True G149854
TU177779 lncRNA upstream 560561 17018956 ~ 17019183 (-) True G150089
TU177718 lncRNA upstream 569722 17028117 ~ 17042478 (-) True G150036
XM_026919384.2 mRNA downstream 81080 16325942 ~ 16362375 (-) True otud7a
XM_026919996.2 mRNA downstream 175469 16265562 ~ 16267986 (-) True trpm1b
XM_026919070.2 mRNA downstream 180516 16256510 ~ 16262939 (-) True LOC113529693
XM_026919995.2 mRNA downstream 188959 16251344 ~ 16254496 (-) True LOC113530180
XM_026918917.2 mRNA downstream 205298 16236143 ~ 16238157 (-) True rps27l
XM_026919690.2 mRNA upstream 82457 16540852 ~ 16546270 (-) True anxa2a
XM_026919801.2 mRNA upstream 88930 16547325 ~ 16566002 (-) True ice2
XM_034307590.1 mRNA upstream 88930 16547325 ~ 16562803 (-) False ice2
XM_034307591.1 mRNA upstream 88930 16547325 ~ 16562788 (-) False ice2
XM_026918892.2 mRNA upstream 108900 16567295 ~ 16800368 (-) True roraa
XR_004578830.1 other downstream 451361 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1215423 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1355439 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1630750 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2610566 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 294781 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 594971 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1295989 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1747758 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 1846243 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile