RNA id: XM_026918983.2


Basic Information

Item Value
RNA id XM_026918983.2
length 7789
RNA type mRNA
GC content 0.56
exon number 59
gene id tln2b
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16895710 ~ 17011850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGGAGCTCTAGTGTACAGAGGCTGGAGCACCCCACAGCCTGCTGCCTCTCTCCACCAGCTCCTCTCTCATGCACCACGCTGCTGGATTTCAGctgTGGAGAGCCGCTGAGGTGCTTTGCCTTTGTATGTGCAAACAATAAGAGGTCAAGATGGTGGCCCTGTCGCTGAAGATCTGTGTGCGGCAGTGCAATGTGGTGAAGACTATGCAGTTTGAGCCCTCCACCCCAGTGTATGACGCCTGCCGCATCATCAGAGAGAGGGTTCCCGAGGCCCAAACTGGACAAGCCTCAGATTATGGCCTGTTCTTGTCAGATGATGACCCTAGGAAAGGCATCTGGTTGGAATCCGGTCGTACGCTAGACTACTACATGCTCCGAAATGGGGATGTCTTGGAGTACAAGAAAAAGCAGAGGCCGCAGAAGATTAAAATGCTGGATGGAGCGATCAAGACGATCATGGTGGATGATTCCAAAACCGTCGGCGAGCTGCTTGTCACTATATGCAGCAGGATAGGAATCACAAACTACGAGGAGTACTCTCTGATCCAGGAGCAGGGGGAAGACAAGAAGGAGGATGGCATGGGTACACTGAAGAAGGAGCGAACTCTGCTCCGAGACGAGCGGAAGATGGAAAAACTCAAAGCCAAGCTTCACACAGATGAcgagtTGAACTGGCTGGACCACAGTCGGACGTTCCGTGAGCAGGGGGTGGAGGAGAGCGAGACGCTGCTGCTCAGGAGGAAGTTTTTCTACTCTGACCAGAACGTGGACTCTCGTGACCCTGTACAGCTCAACCTGCTTTATGTTCAGGCCAGAGATGACATCTTAAATGGCTCCCACCCAGTGTCCTTCGATAAGGCGTGCGAGTTTGGTGGAATCCAGGCACAGATCCAGTTCGGTCCCCATGTGGAGCACAAACACAAGCCCGGATTCCTAGACCTGAAGGAGTTCCTGCCTAAAGAGTATATTAAGCAGAGAGGGGCTGAGAAGAGGATCTTTCAGGAACACAAAGGCTGTGGTGAGATGACGGAAATCGAGGCGAAGGTGAAATACGTAAAGCTGGCCAGGTCCCTGAGAACATATGGAGTGTCGTTCTTCCTAGTGAAAGAGAAGATGAAGAGCAAGAATAAGCTTGTTCCACGGTTACTGGGAATAACCAAAGAGTCTGTGATGCGGGTGGACGAGAGGACCAAAGACGTAGTGCAGGAGTGGCCCTTAACCACAGTGAAGAGATGGGCAGCATCCCCCAAGAGTTTCACATTGGACTTTGGTGAATACCAAGAGAGCTACTATTCTGTTCAGACCACAGAAGGAGAGCAAATCTCCCAACTTATTGCAGGATACATAGACATTATCCTTAAAAAGAAACAGAGCAAGGACCGCTTTGGTTTGGACGGGGATGAAGAGTCCACCATGCTGGAAGAATCAGTTTCACCAAAGAAGTCTACTATCCTGCAGCAGCAGTTTAACCGCGTGGGCAGAGTGGAACATGGATCAGTGGCACTACCTGGCATCATGCGCTCAGGCTCCGTCGGCGGGCCTGACACTTTCAACATGGGCACCATGCCTGCTCCACAGCAGCAGATCACTATGGGGCAGATGCACAGAGGACACATGCCCCCACTGAGCCTGGCCCAGCAAGCGCTTATGGGCACCATAAACAGCAGCATGCAGGCAGTACAGCAGGCTCAGGCGGACCTCGGAGAGGTGGACAACCTGCCACCACTGGGACAGGACAGGGCATCCAGGGTGTGGGTTCAGAATAAAGTGGATGAATCCAAGCACGAAATCCATTCGCAAGTAGACGCCATCACTGCTGGAACCGCATCCGTTGTCAATCTTACTGCAGGTGACCCTACAGACACTGACTACACAGCTGTAGGCTGCGCCATCACCACCATCTCCTCCAACCTGACTGAGATGTCGAAGGGCGTGAAGCTGCTGGCGGCTCTCATGGAGGACGAGGTGGGCAGTGGGCAGAGGCTAATGGGGGCGGCCAGGACTCTAACCGGGGCAGTATGTGACCTGCTCAGGGCTGTGGAGCCGACATCTGGAGAgCCTAGGCAGACGGTGCTGACAGCAGCAGGTAGCATCGGACAGGCTAGCGGAGACCTGCTGCGCCACATCGGAGAGGGAGAGACCGATGAGAGattccagGACATTATGATGAACCTGGCCAAAGCAGTGGCCAACGCTGCTGCACTGCTGGTACTGAAGGCGAAGAATGTGGCCCAGGTAGCTGAGGACACGGCACTGCAGAACCGTGTGATAACTGCAGCCACGCAGTGTGCCCTCTCCACCTCACAGCTTGTGGCCTGCACCAAGGTGGTGAGCCCCACCATCAGCTCACCCGTGTGCCAGGAGCAGCTGGTGGAAGCAGGCAGGCTGGTGGAGCGCTCAGTGGAGTTGTGTGTTAAAGCGTGCCATGCTGCCTCGGACGAGGCTGAGCTGCTTCGGCAGGTGAATGGAGCGGCGGGCACAGTCAGCCTGGCACTTAGCGACTTGCTGCAGCATGTACGCCACTACGCCAGCTGTGGTGAACCCATCGGCCGCTATGACCAGGCCACTGATACTATCATGACCGTCACTGAGAGTATCTTCACCTCTATGGGAGATGCAGGAGAGATGGTGAGGCAGGCTCGTGTGTTGGCCCAGGCCACGTCAGACCTGGTGAATGCCATGCGTTCGGATGCTGAAGCCGAGGTGGATGTGGATAACTCCAAGAAGCTGCTGGCTGCAGCCAAACTGCTGGCTGATGCTACGGCTAGAATGGTGGAAGCTGCAAAGGGGGCTGCGGCTCACCCAGAGAACgaggagcagcagcagaggCTGAGAGAAGCTGCGGAGGGCCTGCGAGTGGCCACCAACGCTGCAGCTCAGAACGCCATTAAAAAGAAGCTGCTCAACAGACTGGAGATTGCTGCCAAGCAGGCTGCAGCAGCAGCTACCCAGACCATTGCAGCAGCTCAGAATGCAGCTGCCTCCAACAAGAACACCGCATCCCAGCAGCAGCTAGTGCACAGCTGTAAGGCTGTAGCAGATCACATCCCTCAGCTGGTGCAGGGCATGAGAAGTAGCCAGGCCCAGCCAGAGGACCTGAGCGCCCAGCTGGCCCTCATCATCGCCAGTCAGAGCTTTCTACAGCCGGGCGGTAAAATGGTTACTTCAGCAAAATCAGCCGTCCCGACAGTAACAGACCAGGCAGCAGCTATGCAACTGGGACAATGCGCCAAGAACCTGGCCACCTGCCTGGCAGAGCTCCGGACAGCTGCACAGAAGGCTCATGAAGCATGTGGGCCTCTGGAGATAGATTCAGCTCTCAGCACTGTCCAGACCTTGAAGAATGAACTCCAGGATGCCAAGATGGCTGCACTTGATGGACAACTCAAACCGCTACCTGGAGAAtcgCTGGAGAAATGTGCTCAGGACCTGGGGAGCACCTCCAAGGCTGTGGGCTCCTCCATGGCACAGCTGCTCACCTGTGCTGCACAGGGCAATCAACACTACACTGGTGTAGCCGCAAGGGAGACGGCCCAGGCTCTGCGGACTCTGGCTCAGGCTGCACGCGGAGTGGCTGCCTGCACGGCGGAGAGGCAGTCTGCAGCAGCCATGTTGGATTCAGCCAGTCATGTAATGGAGGGTTCGACCATGCTGATCCATGAGGCCCAGCAGGCCCTGGTGTGCCCTGGAGACGCCGAGAGCCAGCAGAGACTAGCGCAGgTAGCAAAggctgtctctcactctctgaaTAACTGTGTGAACTGTTTGCCGGGACAGAAAGACGTAGACATGGCTCTGAGGAGCATCGGAGAAGCCAGCAAGAAACTTCTGGTGGAAAATTTGCCTCCATGCTCCAAGTCATTCCAGGAGGCTCAGACTGACCTGAACCACACAGCCGCTGAGCTGAACCATTCCGCTGGAGAAGTGGTGCACTCGTCACGTGGCACCAGCAGCCAGCTTGCTGTGGCCTCTGGCAAATTCAGTCAGGACTTTGACGAATTCCTGGACGCTGGCATTGAGATGGCTGGACACACTCAGTCCAAAGATGACCAAATGCACGTGATTGGCAATCTGAAGAACATCTCAATGGCCTCCAGCAAGCTGCTGCTGGCTGCCAAGTCACTGTCTGTGGATCCTGGAGCTGCTAATGCCAAGAATCTTCTCGCAGCTGCAGCGAGAGCTGTTACCGAGAGCATTAACCAGCTCATCACACTGTGTACCCAGCAGGCACCTGGCCAGAAGGAGTGTGATAATGCTTTGCGTGAGTTAGAGgCGGTTAGAGGAATGCTAGACAACCCCAATGAACCTGTCAATGATCTCTCCTACTTTGATTGCATTGAGAGCGTAATGGAGAACTCCAAGGTGCTGGGGGAGTCCATGGCAGGTATTTCGCAGCACTGTAAGACAGGAGATGTGCCGGCTTTTggggagtgtgtgggtgtggcgTCCAAAGCACTATGCGGACTGACAGAGGCAGCCGGACAGGCATCGTATCTGGTAGGTGTGTCGGATCCTAACAGTCAGTCAGGTCATCAGGGATTGGTGGACCCCATCCAGTTTGCCAAAGCTAACCAGGCCATTCAGATGGCATGTCAGAGCCTGGTGGACCCAGCCAGTAGTCCCTCCCAGGTGCTGTCAGCAGCCACGATTGTAGCCAAGCACACCTCAGCTCTCTGCAATGCCTGTCGTCTAGCGTCATCCAAAACCGCTAACCCTGTCGCCAGGAGACATTTTGTGCAGTCAGCCAAAGAAGTGGCCAACACCACGGCTAACCTCGTCAAAACTATTAAGgCCCTGGATGGAGATTTTTCCGATGAGAACCGCGAAAGATGCCGTGTTGCCACAACCCCTCTCATACAGGCTGTGGAGAATCTCGCCACATTTGCTTCTAATCCAGAGTTCGCCAGCATTCCTGCTCAGATAAGCAACGAGGGCTCAGCAGCTCAGGAGCCAATCCTGTGCTCGGCTCGTTCTATGTTGGACAGCTCCACCCAGCTGTTGAAAAGTGCTCGCTCTCTCATCCTCAACCCTAAAGACCCACCTACATGGTCCGTCCTGGCAGGTCACTCTCGCACGGTGTCCGACTCCATAAAGAGCCTCATCACTGCCATCAGGGACAAGGCTCCAGGTCAGCGGGAGTGTGATCACAGCATCGACAGCATCAACAAGTGCATCCGAGACATAGAGCAAGCCTCCTTAGCTGCCGTGGGCCAGAGTCTACCATGCAGAGACGACATCTCTTTAGAGGCCGTGCAGGAGCAGGTGACCTCGGCCGTGCAGGAAATTGGCCATCTGATAGAACCCATCTCCACTGCAGCCCGTGGGGAGGCCGCACAGCTTGGGCAcaagGTGAGTCAGGTGGCTAGCTACTTTGAGCCACTCATTGTAGCTTCAGTGGGACTGGCCTCTAAGCACATGGACCACCAGCAGCAGATGAACATCCTGGACCAGACCAAGACCCTTGCCGAGTCCGCACTGCAGATGCTCTACGCAGCCAAAGAGGGTGGAGGAAACCCTAAGGCAGCCCATACCCATGATGCAATAGCCGAGGCAGCGCAGCTGATGAAGGAAGCAGTAGATGACATCATGGTGACGCTGAATGAGGCGGCGAGTGAGGGAGGGATGGTAGGAGGCATGGTGGAGTCCATCGCTGAGGCCATGGGACGGATGGATGAGGGAACTCCGCCAGAACCGGACGGCACATTTGTAGATTACCAGACCACCATGGTGAAATTCTCCAAGGCTATCGCTATCACCGCACAAGAGATGATGACAAAGTCAGTGACGTGCCAGGAGGAGCTGGGTGGCCTGGCGTCTCAGGTGACTGTGGACTACATCCAGCTGGCACAACAAGGACGTCTGGCAGCCGCCACAGCCGAGCCGGAGGAGGTTGGCGTGCAGATAAAAAGCCGCGTGCAGGAGCTCGGTCATGGCTGTATCTACCTGGTGCAGAAGGCTGGCGCACTCCAGATGAGTCCCACAGACAGCTTCACCAAGAGAGAGCTGATCGAGTGTGCACGAGCTGTCACCGAGAAGGTGTCCATGGTATTGTCCGCCCTCCAAGCAGGTAACAAAGGCACCCAGGCCTGCATCACGGCTGCCAGCTCTGTCTCTGGCATCATCGCTGACCTGGACACAACAATCATGTTCGCCACTGCAGGCACGCTTAACGCCGAAAACGAAGAGTCCTTCGCAGACCACAGGGAGAACATTCTGAAGACAGCAAAGGCTCTAGTGGAGGACACCAAGCTGCTAGTGGCTGGCGCAGCCTCCAGCCAGGAGAAACTGGCCCAGGCTGCGCAGTCCTCCGCCAAGACCATAACCCAGCTGACAGACGTGGTCAAACTAGGGGCTGCCAGCATGGGCTCAGACGATCCGGAGACGCAGGTGGTTCTCATCAATGCTGTGAGGGATGTGGCCAAAGCTCTTGCCGAACTGATAGGTGCGACTAAGTGTGCAGCAGGAAAACCAGCAGATGATCCTTCAATGTACCAGCTAAAGAGTGCTGCCAAGgTGATGGTGACCAATGTGACATCTCTGCTGAAAACGGTCAAAGCCGTGGAGGATGAAGCCACTCGTGGCACGAGGGCTCTTGAGGCCACCATTGAGTTCATTAGACAGGAGCTGACGGTTTTCCAGTCCAAGGATACTCCGGAGAAGATTGCCACGCCAGAGGAGCTCATCCGCATGACCAAGGGCATCACTGTAGCCACGGCCAAATCTGTGGCAGCGGGCAACTCTGGCCAGCAGGAGGACGTCATCGCCACTGCCAACCTGAGCCGCAAAGCCATCTCCGACATGCTGCTCACCTGCAAGCAAGCTGCGTATCATCAGGAGGTGGCTGAGGATGTGAGGAACAAAGCCCTGCTTTACGGCCTAGAGTGCACGACCGGATACATTGACCTGCTCGAACACGTcctactgGTTTTGCAGAAGCCTACAGCAGAGCACAGACAGCAGCTAGCTGTGCTGTCAAAGAAAGTAGCCAGCTCAGTCACCGAGCTTATCCAGACTGCTGAAGCTATGAAAGACGGAGGCTCAGAGTGGGTGGATCCTGAGGACCCTACAGTAATCGCTGAGACGGAGCTGCTGGGGGCCGCTGCTTCCATTGAGGCTGCAGCTAAAAAACTGGAGCAGCTTAAGCCCAGAGCCAAGCCAAAGCAAGCAGATGAGTCGCTGGACTTTGAAGAGCAGATCCTGGAAGCAGCCAAGTCCATCGCAGCAGCGACCAGCGCTCTGGTGAAGTCAGCATCAGCTGCTCAAAGAGAGCTCGTAGCCCAGGGCAAGGTGGGCTCTGTCCCGGCCAATGCTGTGGATGATGGCCAGTGGTCTCAGGGCCTCATATCCGCAGCGCGTATGGTAGCAGCTGCCACCAGTAACTTGTGTGAAGCAGCCAATGCCTCAGTGCAGGGTCATGCCAGTGAGGAGAAGCTCATCTCGTCTGCTAAACAAGTAGCAGCGTCCACTGCCCAGCTGCTGGTGGCCTGCAAAGTGAAAGCTGACCATGACTCGGAGGCCATGAGGAGACTACAGGCTGCCGGGAATGCAGTGAAGAGGGCGTCAGATAATCTAGTGAAGGCGGCTCAGAAAGCAGCCTTTGACAAGGCCGAGGACGATAGCGTGGTGGTCAAGACTAAATTTGTTGGTGGAATTGCCCAGATCATTGCAGCTCAGGAGGAGATGctgaggaaggagagagagctggaggagGCACGCAAGAAGTTGGCCCACATCCGACAGCAGCAGTATAAATTTCTGCCCACTGAGCTGCGAGAAGATCAGAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177389 lncRNA upstream 321838 16540599 ~ 16573872 (+) True G149729
XR_004578660.1 lncRNA upstream 421482 16460380 ~ 16474228 (+) True LOC117597920
TU177373 lncRNA upstream 446570 16446039 ~ 16449140 (+) True G149723
TU177372 lncRNA upstream 455656 16439706 ~ 16440054 (+) True G149722
XR_004578685.1 lncRNA upstream 553747 16338590 ~ 16341963 (+) True LOC117597940
TU177842 lncRNA downstream 226990 17236641 ~ 17236946 (+) True G150148
TU177846 lncRNA downstream 244016 17253667 ~ 17255337 (+) True G150152
TU178004 lncRNA downstream 420492 17430143 ~ 17434377 (+) True G150261
TU178009 lncRNA downstream 436598 17446249 ~ 17446460 (+) True G150265
TU178012 lncRNA downstream 447269 17456920 ~ 17457135 (+) True G150268
XM_026919602.2 mRNA upstream 395602 16498524 ~ 16500108 (+) True foxb1a
XM_026919261.2 mRNA upstream 471322 16422623 ~ 16424388 (+) True gcnt3
XM_026919260.2 mRNA upstream 474020 16400842 ~ 16421690 (+) True LOC113529796
XM_026919054.2 mRNA upstream 584651 16296593 ~ 16311059 (+) True klf13
XM_026919443.2 mRNA upstream 644635 16242248 ~ 16251075 (+) True rab8b
XM_034307066.1 mRNA downstream 18426 17028077 ~ 17042476 (+) False tpm1
XM_034307065.1 mRNA downstream 18430 17028081 ~ 17042473 (+) False tpm1
XM_034307064.1 mRNA downstream 18430 17028081 ~ 17037570 (+) False tpm1
XM_026919631.2 mRNA downstream 18431 17028082 ~ 17042473 (+) False tpm1
XM_026919634.2 mRNA downstream 18431 17028082 ~ 17042472 (+) True tpm1
trnav-aac_18 other upstream 854463 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1073119 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1075554 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1076137 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3075048 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 824586 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 824586 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 824586 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 1665359 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 1711944 18721595 ~ 18724686 (+) True urahb

Expression Profile