RNA id: XM_034307326.1


Basic Information

Item Value
RNA id XM_034307326.1
length 4803
RNA type mRNA
GC content 0.49
exon number 28
gene id cadps2
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17949291 ~ 18079622 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACGTGTTGCAGCGCCACAGGTTTGCTACCTGTCTTTGCGTGACAGCAGTGGGCTCGCGCACAGCACAGGCTCGCGCTCAGCGCTCTGCGCTCAGGAACGCGCGGAAACGCGAGTAGCGCTGAATGGTTCCCGgtgtagccccgccccctgagCCGAGCTCACACGTTTCCACAGTGTTATCAAGTGCACTCGCGTCTGAACGGCGGAGAGAATCAAAAGACGCTCGCTCTGCTTCTGTGTAAGTTCTCCAAACCCGGGTGTCGACCATGCTGGACCCGTCCTCCAGTGAAGAATCCGAGGCCGAACTTCCACCAGAGGATGAAGCTGCGGTTAAAAGTCTGAGTGAAAAACTCCCGGAAAAGACGGAAAAAACCGAAAAGACCCCCGGAGCTGTGCGGACGCAGCAGAGCAAAAAAGCAGTTCCTCCTTCTCCTGAGGACGAGAAGAAAAGCGAGCAGGAAAGACTTCAGAGAGAAGAAGCGGAGAGGAAAACCAAACTGCAGATTTATGTGTTTGTACTGAGGTGCATAGCGTATCCTTTCAATGCCAAACAGCCGACAGACATGGCACGGAGACAGcagaagctcaACAAACAGCAGCTACAGGCGGTGAAGGAGAGATTTCAGGCCTTCCTTAAAGGAGAGACACAGATTGTAGCTGACGAAGCTTTCTGCAATGCCGTGCGCAGTTACTATGAGGGTTTTCTGAAGAGTGAGCGTGTGACACGGATGGTACAGAGTGGAGGCTGCTCAGCCAGTGATTTCCGTGAGGTCTTCAAGAAGAACATTGAGCGCCGTGTGCGTAGCCTGCCCGAGATTGATGGCCTGAGCAAAGAAACCGTGCTGAGCTCCTGGATCACCAAGTACGACATCATTTTCAAGGGCGAGGAAGACCAGCGGTGGTCGCAAGGACGCATGCCCTTCAGCGCGGTGTCCGAGCTCATCCTCAGTAAGGAACAGCTCTATGAGATGTTCCAGCAGATCTTGGGCATCAAGAAATTTGAGCATCAGCTGCTCTACAATGCTTGCCAGctGGATAATGTTGATGAGCAGGCAGCACAGATCCGCAGAGAATTGGATGGAAGACTGCAACTCACGGACAGAATTGCCAGACAGGAAAGGAAGTTCCCTAAGTTCATATCTAAGGACATGGAGATGATGTATGTGGAGGAGCTGAGGTCATCAGTCAACCTGCTAATGGCAAATCTGGAGAGCCTTCCTGTAGCCAAAGACTTGAAGCCCAAAATCAAGCCAAAACTCACTCCTATGAACAGCTTCCTGGATATAGGAGATGAGAATGATCTGCCACTTTCCAAATCAGATGTAGTGCTATCCTTCACTCTGGAGATTGTGATCATGGAGGTACAGGGGCTGAAGTCAGTGGCCCCTAACAGAATAGTCTATTGTACCATGGAAGTAGAAGGAGGAGAAAAACTTCAGACAGATCAGGCTGAGGCCTCCAGACCACAGTGGGGCACACAAGGAGACTTCACCACCACCCACCCACTGCCTGTGGTCAAAGTGAAGCTGTTTACTGAGAGCACAGGTGTCCTGGCTCTGGAGGACAAAGAGCTGGGCAGGGTGGTATTGAACCCTACAACAAATGGGCCGAAAACTGCAGAGCTGCACAAGATGATCATCCCTAAAAACAGCCAGGATGTAGACCTGAAGATTAAACTGGCTGTGCGTATGGACAAACCACCAAACATGAAGCACAGTGGGTACCTCTATGTACTGGGGCAGAGAGTGTGGAAACGATGGAAGAGGCGATATTTTGTTCTTGTTCAGGTTAGCCAGTACACATTCGCCATGTGcagctacagagagaaaaaatcaGAGCCACATGAGCTCATGCAGCTGGATGGATACACAGTAGATTATTCTGATCCACAGCCCGGTCTTCAGGGAGGCCAAGTCTTTTTTAGTGCAGTCAAGGAGGGGGATTTGGTGGTATTTGCCACGAATGATGAACAAGACCGAACGCTGTGGGTGCAGGCGATGTATCGCGCCACAGGCCAGTCCTACAAACCAGTACCTCCTGCACAGAACCAGCAGCACAACTGCAGAGGGGGGAGTATCCAGAAAGATGCCCCTGCTTCATTACTCAGTTTGGAGAGGGCAGGAGTCGAGGAGCTCATCTCTGCCGTTCCCTGCAGCTTCAATCACGCAAACCTGTTTCAAAtgctgcagaaacacacactccaccaccGCATGAATGACTCCTTCTCCTGCCTGGGATGGTTCAGCCCAGGCCAGGTGTTTGTTCTGGATGAGTACTGTGCTCGGTATGGCGTGAGAGGCTGCCATCGCCACCTCTGTTACCTGAAAGAACTGATGGAATTCTCAGAGAACAATGCGTTGGTGGACCCCACCCTCCTCCATTACAGCTATGCCTTCTGCGCGTCTCATGTCCATGGGAACAGaccTGATGGAATGGGTACCATCACAGAAGAGGAACAGGAGGAGTTTGAAGAGATAAGGGTCAGGCTGCTGACTCTGTTGGAGAAACAGATTACACATTTCAGGTACTGTTTCCCCTTTGGACGCCCAGAGGGGGCTCTAAAAGCCACACTGTCACTTCTAGAACGGGTTCTTATGAAAGACATCACCACACCAGTCCCTGCTGAGGAGATGAAGAAGattgttcagaaatgtttgGAAAAGGCTGCACTCATCAACTACACCCAGCTGACTGATTACGCCCAGTTTGAAGCCGACTGCCCTCAAGTGCCCCCAGAGAAGAGGCTAGAAGACATGATGCGCCTGGGGGAGCTGTGTATGGAGGTGCTCCAGCAGAATGACGAACATCATTCTGAGGCTTTCTCCTGGTGGCCTGAAGCAATGGCAGAGCATGCTGAAACGTTCTTGTCCCTCTACACAGTAGACATGGATGCAGCTCTGGCGGTGCAGCCACAGGACTCCTGGGACAGCTTTCCTCTCTTTCAGCTGCTCAACAATTTCTTGCGTACTGATCCACACTTGTGCAATGGAACATTCCACAAGCACCTGCAGGAGCTCTACATGCCTCTGGTGGTACGCTATATTGATCTGATGGAGTCCTCCATCGCCCAGTCTGTCCATCGTGGCTTTGAGCAAGAGACCTGGCAGTCTGTCAATAATGGCTCAGCGACATCAGAGGACCTGTTCTGGAAGCTGGACGCTCTCCAGATGTTTGTAATGGACCTGCACTGGCCGGAGCCGGAGTTTGCCAGACATCTGGAGCAGAGGCTGAAGCTCATGGCTAGTGATATGATGGAGGCCTGTGTCAAAAGGACCAAAGCAGCTTTTGATATTAAGATGCAGAAGTCAAGTAAGTCCACTGACTTCAGGGTGCCTTTGTCCGTCTGCACCATGTTCAACGTTCTTATGGATGCTAAGAAACAGTACTCTAAGCTGTGTATCCTCGACCAAGGCCAGGAGATGGACCAACAGTGGCAACAGTACCATTCTAAAATTGATGTCCTGATCGATGAGGCCTTTAAAGAAATGATCTCCTGCCTGGTTTCAAAGTTTGCTGCTGTTTTGGATGGTGTGCTGTCCAAGCTTTCACGATATGATGaaggaacatttttttcttcaatccTTTCTTTTACTGTAAAAGCAGCAGCCAAGTATGTGGACGTCCCAaaACCTGGCATGGATCTAGCAGACACCTACATTACATTTGTGAGGCAAAACCAGGACATCCTCAGAGACCGTGTGAATGATGAGATGTACACAGAGAAAATCTTTGGCCAATGGTACAACACTTCCATGAAAGCGGTGTGTGTTTGGCTTACGGACAGACTGGACCTGCAGCTCCATGTCTATCAGCTCAAAACCCTCATCAAGATAGTCAAGaAGTCCTACCGTGACTTCAGACTGCAGGGTGTCCTGGACAGCACCTTGAACAGCAAGAACTACGAGACCGTCTACAACCGGCTCACTATAGAGGAGGCCACAGCCACTGTGTCTGCGGGAGACGGACTGCAGGGCATCAGCATGAGAGacagtgatgaagaggaggGTTAACTTCAGTCCATCATTATCAGATTCGTCACTCTGGATCATGttagatgtttatataaaacGCTTCACTGAGAGAAGCCAATCTAAAGCTATTTCTGTCCATGCTACAGCACCTCTGTCCAAGCATAACTgtactgttattactgtgtgCCTGTACAATATAGTTCACTGACCACCCGCTGATGGCTCACATGTCTGTATCTTTGTTATATTTCATTTGATGTTCAGTGATTTGGTAAATTAATGTCCAACAAACCTGGCTATAACTGTGTACACTAGAGGTGCTGCTAGAGGTGCTGAGGGCTAGACGTAGGTAAAAACCTGAACAactatataaaaacacaaaacggCTTGTCTGTGGATCTTATCTTTGGTACAAATGGGACCACATATAAGAAAGTTCTCATATGCGCTTTACACTGTGGCATGAACATTGCACACGCAGGTCCGAAGTCTGACACAGGAATAAGATGCTAGTGTTGTGTGATAATGTAACTGGTGACATTATTATGAACTTCAGTTCTTCTGTAGAATTAACAATGAGTTGTGTTAATTGTGTATGTTTCTGTATGTTGTTGCCTAGTTATGTTTTACTTAAGAGAGAATATGTCATCTAATTGTAAggggaaggtgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagatatttctATTGTATTTTGTGCACCTGAGTTTGAACAGGTGTGTTTGAAATGTTAgaattaaaagtgtttttaatgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178394 lncRNA upstream 34050 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 36709 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 108843 17832766 ~ 17840449 (+) True G150590
TU178163 lncRNA upstream 246534 17702554 ~ 17702758 (+) True G150407
TU178012 lncRNA upstream 492157 17456920 ~ 17457135 (+) True G150268
XR_004578772.1 lncRNA downstream 51224 18130846 ~ 18139145 (+) True LOC117598020
TU178595 lncRNA downstream 102933 18182555 ~ 18184010 (+) True tmem17
TU178695 lncRNA downstream 262621 18342243 ~ 18345729 (+) True G150873
TU178734 lncRNA downstream 287260 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 343936 18423558 ~ 18424220 (+) True G150933
XM_026919511.2 mRNA upstream 6337 17934290 ~ 17942955 (+) True slc13a1
XM_026919510.2 mRNA upstream 18146 17921555 ~ 17931146 (+) True iqub
XM_026919222.2 mRNA upstream 38431 17890887 ~ 17910861 (+) True wasla
XM_026919317.2 mRNA upstream 137328 17806125 ~ 17811964 (+) True gpr37a
XM_026919316.2 mRNA upstream 145494 17771861 ~ 17803798 (+) False pot1
XM_026919753.2 mRNA downstream 3320 18082942 ~ 18086735 (+) True fezf1
XM_026919209.2 mRNA downstream 9478 18089100 ~ 18111444 (+) True aass
XM_026919805.2 mRNA downstream 92309 18171931 ~ 18180647 (+) True slc15a5
XM_026920019.2 mRNA downstream 102932 18182554 ~ 18184033 (+) False tmem17
XM_034307649.1 mRNA downstream 102932 18182554 ~ 18184033 (+) False tmem17
TU178368 other upstream 106757 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 106757 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 106757 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 1908045 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2129719 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 595388 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 641973 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 996973 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 1041542 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 1181002 19260624 ~ 19263893 (+) True G151401

Expression Profile