RNA id: XM_026919054.2


Basic Information

Item Value
RNA id XM_026919054.2
length 2021
RNA type mRNA
GC content 0.47
exon number 2
gene id klf13
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16296593 ~ 16311059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACACTCGGGGCCACCACGCCCCCAGCGTGGATACCGACAGCTCCAGTCAGCGCAGAGCACAATACTGTCACTTTACGTGGGTATGGACTTTTCAGCCACGATGGGGAGTTTTCATATTCAAGCAACACAAGTTTATCAGCCTCTCTTTGTCTGAACAATAGCTCTAAAGTGAACAAACAGTCAGTGCGGCGCGTTAACGGTTTGTGTCTCCGCGTGCTTTTCTTCAGGATGTCAGGTTTCTTGAAAAGCCGGTAACGACACGAAGTGAGTTTGCTGAATGTTCAGCATCACACAAAAGGGATCGACGACGGAGTTGAGCGATTTAGACAAGTGTCATTTCGCTTCTGAATGTTATAAAGCAACATCGGGGGCATTTTTGTTTTGCGTCTTTAACAAAATGGAACATTTAGCTGCAGAGTGCCTTGTGTCTATGTCCAGCCGCGCAGTCGTTCACGCTCCTAAAGGGAACAGGGAGATCCGACCCGAAACTGCGCCTGCACCCAGGAACGGAGAAGAGGCCAAGGAAGCGCTGGTGAAGGACAACTCTTCTCTCTTTGTCGTGGCGCGGATTCTGGCGGATTTCAATCAGCAGAGCCCTACGAATTTCGCCGAACAGGCAAAAACGAAAGAAGAGAGCATGCCACCAACCCCAACGCGAGAGGATGGGAACTCTGCCACACCTACCGCCGTCCCTGCCGACTCTGCCCTTAAACAAAGAGGCAAGCGATGGAGGGCTCGCGCTGAGCAGGAGTCCCCGcagaaaaagcacaaatgcCACTATTCTGGCTGCGAAAAAGTTTATGGCAAATCATCACATCTCAAAGCTCACCTAAGGACACATACAGGAGAACGGCCCTTTCCGTGCACCTGGCCTGACTGCAGTAAGAAGTTTGCTCGCTCGGACGAGCTGGCACGCCACTACCGCACACACACGGGAGAAAAGAAGTTCGGCTGCCCACTGTGTGACAAGCGCTTTATGCGCAGCGACCACTTGATGAAGCACGCTCGCCGCCACTCCGACTTCCAGCCAGCCATGCTGAAGAGGCAGCAAGGAGGCAGCGGCACGCTGAACACAGCGAGCAGCACACGACCCGGATCGCTGAGCGACTACAGCCGCTCGGATGCCTCCAGCCCCACACTCAGCCCCACACTCAGCCCAGCCAACTCGCCTTAAACCCGCCTGCACTTTTCCGCCCTCTGCCCCCTGCAgctcagtgctgttttttttaaactcaaattCTTTTCTGTCAAAAGTAGTGATGTTGCACACTTGTTAGCCGCCACCTCTCTTTGCTAATCCTTTCGCTTGCTGTGGTGTACTCTACTGTACATAACTGCTTCCTgtagtgcaattttttttctcaccaacttcaaaaaagagaaaagcagaaaacagagaagaaaatgCCTTTTCCAGATGGCAATATTTACCATATGTACCatatgtctgtattttttatagTCTCTGGCCTCAGCCAGTTTCCATTGTATTTTTGTTGCTCTCTTTTGATCAAATCTgttcaaatgaacaaaaatgtagaCAGAATTAACAGgtataaatttgtttttttgttcctctcttttttttttttaatttatgacgGGTTAGGGGGagtggcgcacacacacacctcaggatTCTAGacagttgtttttcttttcttctcctttaaTATTCACACTGACTGCACAATACAAGCATCACTTTACTCTGAAATTCAACAGGGGTTGAATTTTGTGCCCTGCTCAGGGATGGCCTTGTTAGCTTGAAAGAATGAACATGAAGagaaaacatacataaaacagCCTTACACTcaacaaaaaaattgcactcttccttttgtttttttttatttttattggtgTTCACATCAGGTGAAACTAGTACTAGGTTTAACAGTCATAAAAACTCAATATCTGATCTGGCTGTAAGACGTGGTACCCCAGCATAGGGATTGGAATGGAGTGGAAGTCATTGTGTATTGAGACTGGAAGTaactctttttgtttttaacattgc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09208 KLF9S, BTEB; krueppel-like factor 9/13/14/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177169 lncRNA upstream 41279 16254684 ~ 16255314 (+) True G149552
TU177011 lncRNA upstream 268574 16027607 ~ 16028019 (+) True G149428
TU177010 lncRNA upstream 270081 16024844 ~ 16026512 (+) True G149427
TU176828 lncRNA upstream 478225 15771838 ~ 15818368 (+) True G149276
TU176815 lncRNA upstream 541681 15754665 ~ 15754912 (+) True G149268
TU177191 lncRNA downstream 17197 16328256 ~ 16328539 (+) True G149574
XR_004578685.1 lncRNA downstream 27531 16338590 ~ 16341963 (+) True LOC117597940
TU177372 lncRNA downstream 128647 16439706 ~ 16440054 (+) True G149722
TU177373 lncRNA downstream 134980 16446039 ~ 16449140 (+) True G149723
XR_004578660.1 lncRNA downstream 149321 16460380 ~ 16474228 (+) True LOC117597920
XM_026919443.2 mRNA upstream 45518 16242248 ~ 16251075 (+) True rab8b
XM_026918914.2 mRNA upstream 61212 16231335 ~ 16235381 (+) True dnaja
XM_026918916.2 mRNA upstream 76959 16209778 ~ 16219634 (+) False idh3a
XM_026918915.2 mRNA upstream 76959 16209828 ~ 16219634 (+) True idh3a
XM_026919649.2 mRNA upstream 90143 16202775 ~ 16206450 (+) True lrrc61
XM_026919260.2 mRNA downstream 89783 16400842 ~ 16421690 (+) True LOC113529796
XM_026919261.2 mRNA downstream 111564 16422623 ~ 16424388 (+) True gcnt3
XM_026919602.2 mRNA downstream 187465 16498524 ~ 16500108 (+) True foxb1a
XM_026918983.2 mRNA downstream 584651 16895710 ~ 17009651 (+) False tln2b
XM_034307271.1 mRNA downstream 633581 16944640 ~ 17011850 (+) True tln2b
trnav-aac_18 other upstream 255346 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 474002 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 476437 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 477020 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2475931 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1523178 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1523178 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1523178 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2363951 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2410536 18721595 ~ 18724686 (+) True urahb

Expression Profile