RNA id: XM_026919062.2


Basic Information

Item Value
RNA id XM_026919062.2
length 9007
RNA type mRNA
GC content 0.48
exon number 51
gene id lrrk2
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15577183 ~ 15605737 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCACTGCCGCAAGTCACGCCTGTCTGTGGTCTCTCTCAGAGCCTCCCAAAATAATCGCCAGGCTCTCGGAAATAGGGATCTGTGAGCGTTTAGATCGGTCTACAAACTCCTGCTGGCTTTAGGATCTTCTGTGCTTCTACATAAGGCTATGCTTCAGTACACCATCACCTCAACGCACTCTTTACAGTGTCAGAGAACAAATGGAATAATGCACGTGTTTAATGTCAGCGGTGCGGCAGCACGTTAGAGAGCACCATGGTGAACAAGGAGGATTTGGAAAAAAGCCTGAAAAAGCTGCTTGTGCGGCTGAAGAACAATTTAGAGGAGGGAAAGCAGTTAGGCACCATGGTCCAGATCATCCAGGATCTCCTGTTTCTGGCACACACAGACGAGTGCGCAGAAGAGCTGTTTAAAGACAAAGATGTCCATGAGCCACTGATGCTGCTGCTCTCATCTTGCAGCAACAGCAAACTTCAGCAGGTGGGATGGTCCTTGCTGTGCCGGTTGATGGAGATCTGTCCCACCACCCTGGACAAGCTGGTCCAACCTCTGCGAGCTGGAAAGGACTGGGAGGTTCTAGGGGTGCACCAGCAGATTCTAAACATGCTGACTTTGTATCAAAAAGACCTGAAGGTGGTAATGGTAGGGCTGCGAGCTCTAGCCTTGTTGCTGAGGTCAGATGAGCTGACGTTGCTGGTACTAGAGGAGGAGATGGATGTGTTTGAGCTGGTGGTGGAGGCCATGAAAGCTTTTCCTCACAGTGAGGAGCTGCAGCTCCAGGGCTGCTCTGCTCTCTGCCAGCTGCTGGAGAGAGTTCCAGAGGAACATCAGGTGGAGTTTATTGAGAAGAAGGATCATGCTGTGGTTCTGAATGTGCTCAGGAGGTTCAAGGACAGTGAGAATGTGGTGTTGTCTGCACTGCAGGTTCTCATGCCATTGGCTGAGCCTGCAAGCAATGTAGAGATTCTGATGTCCAAGACTGAAAAATGCTACAGCTTAGTGTGTCAGGCAGTGGAGGCGTTCTCACAGTCGGAGGCTGTTCAGGAGGTGGGGTGCTGCCTGTTGCGGAAATTTACTTCAGAAAGTTACTTCAATATCTTGGTGCTGAATGGTGTGCACAGAGTGGCAGTGAAAGCATGTCTCTCCTACCCTGACAATGGCAAGATCCAGGCGGCTGCGCTGTCCTGTCTGGCTGCACTCACAAAGACAATCCTGGAGAATGAAGACCTCAAGAAGACATGCAGTGAGGTTGAGGACGAAAGAGGTAAAGGAGATGGTGAGGACAATAACGATGAGGAAAGCCTGGTTTGGAGAGAGGCTTGCTGCACAGCTTTGGAGAGACATAGTGACAATGCTGAAGTGCAGGAGGCTGCTTGCTGGGCATTAAACAGCTTGCTGCTCTATGGCAGTGCACGCAATATATATGAGGAACCCAAAGAAAGGCCTCCTGTGTATATACAGGTCATGACTGTGATGCTTGTGCACTCCTCAAGTTttggtgtgtttcaggctgcTGCATCTACGTTGGGCACACTTGTACGTCGACACAGTAAGATGAGGTCTAGGCTCCTGGCCAGTGGCATTCATTACAACATTGTGGATCTGATGAAGAGACATGCCAACTCAAGTGAAGTGTGTGACAGTGCCTGCAGGCTTCTATACACACTTTTCCAGGGAGGGAGTGTGAGTCTGGACGAAGGGACCATGGCTCTAGGTCAGATTTTGATTGCCATGAAGGATCATAATTTCCAGCCTGAGGTACAGTTGGAAGGTCTGAGAGCCAGTTTGGTGCTCCTCAACCCTGACCGCAGTTTGAGGGAGCATGGTGTATCCGTAGCGGATCCAGACACGTCAGATGTGGCTCTGAGAGTGCTAAAAAATCAGTGTGTGGTAGAGGAAGCTCATACTGTCTACCTTCAAGCCTTAAACAGGttcaTCAGCAGTGAGGACATTCAGGAGTGTGGACTTGCTGTTCTAACTGTGCTGGCTGATTGTTCTGGAGCTGCTGATGTAATGTGCCAGCAGGGGGCGATAGACACTGTGctgcacacactacagatgTTTCCTCAGAaaagcaAGATTCACTACTGGGGTCTGAGCCTCCTTTTTCTGCTCATCTCAAAAAAGAAGCTGTCACACATGATGGTGCCCGTGTTGGTGTCTGTTCTCGTCGCCTCTGTGAGGCAGCACAAGGGCAGTGCAGAGATGCAGCTAAAAGGTTTTCAGGTGATATGGAAACTTTTGGACACCTGCTCAGGAGCAGCggctgagctggagaaagaagGCTTTGAGAAAGAGATCTTCCAACAGCTGAGGGAAAGCTCTCCTGATCATAAATATGATCTAAAGCTAAGCTGCCTGTGTCTGTCGAAAATGGTGGTGGATAGTGAGATCCACTACCGCATGCTGGAGAGGGCATGTGAGGAGGGCGATGTCATCATGGCTGAGTGTCTTATACAGCTGGGAACTGATGTAAATAAGAAAACCAAGACAGAGTCTCTGATATATCAGgtgtgtgagCGTGGTGGGCCGCTGGCTCTGGTCGAGGTGCTGGTCAGCAGTGGtgtgcatgagcagcagttgcgTGGGgctctaagtgtgtgtgtgaggaggagaGACGGCCCTCTGGTTGTCCTCCTGCTGGCTCGTCTCGGTCTGGACCCCACCAACAGCGCCCTCTGCTTGGGAGGCTTCAGGCTCGGCCATCTCGAGGCCACATGGCTCAATGCACTGCTCTCCGAACGCAAAGTTCACTCTAATGCTCAGAAGAGGAATAGTAAAGGGCAGTGGCTGGCAAGACAGATAGAGTTCCTGCAGAAGAAGAGGAGTCTTGGTGTTTTGGAGTCACAGAGTGTTGTGAACACTTCAGAATATTTCTCTGATGATGAGAGTGATGACTCTTTTCACACATCTCTggatggcagtgtgttttgtacatttgaaGACATGGAGAGTGATGGAAGTGATAGCCCTGCTTCAGGGAGGACCTACTGTGATTCACCAGATGAATTGAGGGGGCGCTCTAAAGTGAGGCAGCAGGAGCGATCCAGACGTGCCATTTCAGAAGGTGACCCCGAGCTCAATGATTCCTTTAAAAAGAGACTGGCAAGCAGGAAGGGCAAGACCCAAAGAGGACTGGTGTTTTCTGAGAGTTCCTCCCCTGGTGGATCACTGTCAAGTGTGGACAGAGATCATATTAGACTGCTCGATCTATCAGGCAATGAGCTAGACTCTCTCTCATGCTTGATGGATGATGGTACTGTCCAACAACAGCTTGAGCATCTCCTACGTCTGGATTTGAGCAGCAACAGTCTAGCAGAGTTTCCCAGCGCTCTCTGTCAGAGCTTGCGAAGCCTCACTCGACTGGATCTCCAAGGCAACCAGTTGCAATCATTTCCTGCTGAATTGTTGAGCCTACCCTCTTTAAGCATGCTGAATGTGTCACGAAACTGTATCGGTCCTGAGCTCTGTTTGGACCCACATGTGTGCTGTCCAACGCTCCACCAGCTGAATCTTTCTTACAACCACATCACTGTTTTTCCATACAATCTCAGCCAAGTCATGAAAAATCTAGAAGAACTCTCACTTGAGGGGAATCAAATCTCGGAACTCTCCCTTCCTGTCTGTCTTGCTGAAATGAAGGTGTTTGATGTTTCAAAGAATAAATTAACAATGATCTCTGACGGCTTATTGTCTGCATGCACCAAGCTGGAAACATTCAATGCCTCAGTTAACCATCTTAGTTGTTTGTTACAACTTCCTTCTAAATTAACAACACTGAAATTATCCCAGAACAACTTTGAAAGTGTTCCTGAATCAGTTATCAATCTACCAAATTTGCGGTCGTTGGACATGAGGAGTAACAGTATCAGGGTTCTGCCAGGTCCAGCTGCCTGGACCAGTGCTAACTTAAGAGAGCTGATATTCAGCGAGAACCAGATCTCTGTGCTGGACCTCAGAGAACCTGTGTATAAGTGGATCCGTCTGGAGAAACTGCATCTGAGTGATAACAAGCTCACTGAGCTTCCTCGTCAGATCGGGCTGTTGGAGGAGTTGACCTCTCTGGATGTCAATGGTAACGCTGGTCTGCGCTCTTTCCCTGATGAGATGGGTAAGCTGGTTCGGCTGTGGGATTTGCCCTTGGAAAGACTGCAGCTACAACTGGACCTCAAACACATCGGTAACAAGACCAAAGACATTGTCAGACACTTTCAGCACCGTCTGAAGAAGGCTGTTCCGTATTTCCGGATGAAGCTAATAGTGGTGGGGAATGCAGGCAGTGGGAAGACCACTCTGATCCAGCAACTGATGAAGCTCAAGCGTTCTCAGTGGTACTGTGACACAAACTCTTTGAGCATCACTATCAGAGACTGGAGCATCAGAGACCGTGATAGGAAAAACATGGTCCTGAATGTGTGGGACTTCTCAGGTGGAGAGGAGTACAGTGGCTCCTATTCTCAGTTCATGAGTTCCAGAGCCCTCTACTTGGTGCTATATGACCTGAGTAAAGGAGCCAGTGAGCTGGACACCATCAGACCCTGGCTCTTCAATATCAAAGCACTCGCCCCTGTCTCATCTGTGATTCTGGTTGGCACTCATTTGGACGTATGTGAAGATGGCTTGGTACAGGAGTGTGCACTTAAGATTCAGGAGGAGGTGTTGTCCCAGCCGCTTTTCCCAACCATTAGGGAGCGCCACATGCTGTGTGCCCGTGAGGAGTCAGACTCTATCAACAGACTGCGCAAGGCCATCGCCAGAGAGGCCAGCAGTTTTAAGATCCAGGGGCAGCCGGTGATGGGGCAGCTGGTTCCAGATTGTTATGTTGAGCTGGAGCGGAGGATTCTGAAGGAGCGGCGCCGTGTGTCTGATGAGTTTCCTGTGCTCAGACACCAACGCCTCCTGCAGCTTGTTGAGGAGAGCCAGCTGCTTCTGGAGGAGGGAGAACTTGCTCACGCAGTTCGATTCCTCAGTGAGACTGGTGTGCTCCTGCACTTTGATGACCCTGCACTGCAACTCAGAGACTTGTATTTCATTGATCCCCAGTGGCTCTGCAACACCATCTCACAgATTCTGACTCAGAAGAGCCTGTGTGAGAACTCTAGGGGGGTGATGCAGCGCTCAGTTGTGGAGAAATTTCTCAGTGAGAGCCGCTGCTTCCCAAAAGGTCACTTCATGCACTACTTCAAACTGCTGGAAAAGTTCCAAATCGCCTTGCCCTTGGGAGACGAGCAGCTACTGGTGCACTGCAGCTTGTCTGATCACAAGCCAGTGATTGAGATTCCTCACTGTGAGAATTCAGAGATCATTGTGAGGGTCTATGAGATGCCTTATTTCCCTATGGGCTTCTGGTCCAGACTGATCAGCCGGCTTCTGGAGGTCTCCTCACTCATGCTCCAGGGTAGAGAGAAAGCTTTGAGGCCAAACCGAATTTACTGGAGGACAGGGGTATACCTGAACTGGTCTGCTGAGGCGTACTATCTAGTGGAAGCCTTCGCAGATGTGAACAGCCCTGCCAGCTTTGTTAAGATCACTGTGCCTTGCTCCCGTAAAGGTCATGTGTTGTTAGGCCAGGTGGTTGATCATATTGACTCTGTGCTGGAGGAGTGGTTTCCTGGCCTCCTCAACACTGATATACAAGGTGATGGGGAGACACTGCTGAAGAGGTGGGCATTGTACAGTTTCGATGACACTCAGGACTGGAACAAGATGCTGCTGCAGGATCTACTCAAACACACTAATAAAGATGGTCTGTTGGTGAACCCAGAGGACCCTCACTGTACAATCCCCACCTCCCAGATCTGCCCTGACCTCATTCTGAGTGACCAGCCAGCTAGTATCATGTTGGACCCTGAGGAGCTAGAAATGGATCTTTCCGAAGAGTACCTGCTTGGAAATGGAGGCTTTGGCTCAGTGTACAGAGCAATATACAAAAATGAAGAGGTTGCTGTGAAGATTTTCAACAAACATGCAGCAGAGCTCTATGTTCATAGATTAGTAAGACAGGAGTTGGCTGTATTAGGCAGACTGCGCCATCCCAGTGTTGTGGATCTACTGGCTGCAGGAAGCTCCCCCCATGTGCTGGTGATGGAACTGGCTCCATGTGGTTCTCTCGACTCACTGTTTGAACATGAAAATGGCAGCCTGAATCGCAAACTGCAGCATAGGATCGCACTACAGGTGGCTGATGGTCTCAGATATTTGCACTCTTCAATGATAATCTACCGGGACTTGAAACCTCACAATGTGCTGCTGTTCAATCTTAAGACTGACTCAGAGATGATAGCTAAGCTCACTGACTATGGCATTGCTCAGTACTGCTGCAGCATGGGAGTCAAGAGCTCTGAAGGCACTCCAGGGTTCAGAGCACCAGAGGTTGCTCGTGGTAACGTGATCTATAACGTACAGGcagatgtttattcatttggccTGCTACTATATGATCTTTTGACCTGCGGAGAGAGAATATCAGATGGTCTGAAGTTCCCCAGCGAGTTTGATGAAATAGCCGTGCAAGGAAAGCTACTGGACCCAGTGAAACACTACAAATGTTCACCCTGGCCGGGGTTTCAGAACCTAATGAAGGAGTGTCTGAGAGAGAACCCAGAGAGCAGACCCACATCTGCACAGGTGTTTGACTGTCTGAACTCAGGAAACATGCTGTGTCTGCTTAGTGAGCTGACTCTGCCTGGGCTGTCCTGCGAGTGTTTCACTGTCTCCTGTCCCAGTGGTGGTTTGGGTGGAAGTGTCAATGGTGGTGCTGGGGCTCAAGTGTGGATGGGAGGTGGCAGTAGCAGCCAGAAGCTAGGCTTTGTCACATGTGTGGAtgtagagacagagaaatggTCCACACGGGAGATTGACCAAAGCCCAGTCCTCTGCCTGGTGACTGTCAGAGTGCCTGGAGAGGTCCATGACTGGTTAGTTGCAGGAACGCAGAGTGGCTCACTGGTGGTTATGAACACAAGGAACATTACAGTTTTGCACTGTTTACAGAGTACAAAGGATGCAGTGACCTCAATGTTCTTCCACACGCCTTCTCAACGCAGcCGCTTAAAGAACTACCTTTTAGTGGGAACAGCAGATGGAATGCTTGTCATTTATGAAGATTCAGTTATAAAGTGTGCTGATGGTGCTCCAGTTAAGCTTGTGCAGGTTGGGAATGTGAACACACCCCTGATGTGTCTGGCTCCATCTGGCCACTATCAGGACCGTACCACTCTGTGGGCTGGCTGTGGCACGAGGGTGATCTCTCTCACTGTGGACTATGACATCTCTAAGAGTATAGACACCAGTCTGCAGCGTCTGACCAACAGTGAAGCATGTATCTCTCGGCTAGTCGTTGAGAAGTATGTGTATCTGAGCAAAAATGGAGGACACCGTGTAGAGGTGTGGGATAAGAAGAGTGGAAAGATGATTGATTTCATCGACTGTGTGCAGTTACTCAGGAAGGTCAGAGCTGGGAGTGCTGACAGTTTAAAAGAAATGGAGTCATTGTGGGCTCGTGTGAAGTCTCTGCTGGTCCAGCATAACGGCACGCTGTGGATAGGCACTGGATCTGGACACATCCTGCTGGTGGATCTGTCTACACGTCAGCTACTGCAGGTTATCAGCCCTGGCTGCCATTCAGTGCGCACTATGGCCTCTGTGCTGATCGGAACACAAGGCCAAAAAAGTGTGATTCTGATGTTGGGCACACGTGTTCAAATGTCTCAAGAGAAGATCAAGTCTCAATCAGatAAGGATACTGTGTTGATGATGTGGAGTAGTACCCTGTCTCAGGAAATAAAGGATCTGAACAGACACTGTGAGCTGAGACAGCAGATTGCATACAAAATGCAAGAACAGGCCAATCACTGAACCTTATTCTCACATCTGCCAAACTTGACACTAGTGTAAATTATCACCACTTCGTTGTTCACTAATTATGAATTTGTGTCATTTCATTTGGAAATGAAAAAGGGATCCATGTGTGTATTCACTCTGTTGGTAGACATGTTGCACAATTAAGGAAAAGCTCTTTTTATACtcatttttatatatctttTGTCTGGTCAGCATTGTCTTGTATACCACCCTTCTTCACAGTATAAAAGCTAACTTGTCTCATAATattcattttcaacatttaaaatGGCATCTACAGATGTATGATTTTACCTACATTGTTcttgtaaattaattttaaattctcGTAGTTCAGGCTGCTGGAGAATTGTATAGAATGGTCACGCTGTGATGAAATCTTTCATAGCTTGTGCAATCACATCAGCGATCCTCAAGCTTGATAGCAGTTTAGTGATTCCGTTTTAGACTATGGTGGAACTAAAGCCTGGATGACTGTAGGAATGGTGGCCTAGAGGCTTGCAGCATTATATGACTGAACAATCCATGTTACTGTAAACTGTAAGGTGCAGCAgaatgtttgttttctctcccCTTACATGCcagtcttaaaaaaaacagcaaaagattTGTTGATTCCAGGGTATatgctgtataattataaaataacactataataataattataaaataatactatatttacaattatgtaatACTTCATCAGAATATCTGATTGTTTTGCTCTAATGTGCCGACAAATTTATCGCTCCCTCCCCCCAAGTTCTCTAAGGGTTTCTTAAAAGGTTCTTTGCTTCCAAAAGTGTGCCACCTTAGGACTCTGTAATAAGGAAACTGTCTGTTGTACAGGATCacgtagaacctttaagagCTCGACCAGAGGGACAAGCCCAAGAACcctctttgtttgtttgtgtgtgtgtgtttgtacagatTTGCTTACAATTTCATAGATTATTTTGCAAAGGGATTGTAACTTTGTTACTTCGCTGGGACTACTTGTGAAAGAACTGGACAATAAGCCAAAGATAGAGCATTTACAGCAATGTATTGCTTATTTTTACTCAAAATATGAATGTGCATGCCAATGTAAtattgtattgttattgttctgttaagaaaaaataattatttgactttta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176640 lncRNA upstream 7696 15567836 ~ 15569487 (+) True G149131
TU176588 lncRNA upstream 93280 15483074 ~ 15483903 (+) True G149091
TU176586 lncRNA upstream 95155 15481687 ~ 15482028 (+) True G149089
TU176585 lncRNA upstream 95613 15481252 ~ 15481570 (+) True G149088
TU176517 lncRNA upstream 125279 15451576 ~ 15451904 (+) True G149027
TU176794 lncRNA downstream 105276 15711013 ~ 15711917 (+) True G149248
TU176798 lncRNA downstream 115611 15721348 ~ 15725091 (+) True svip
TU176815 lncRNA downstream 148928 15754665 ~ 15754912 (+) True G149268
TU176828 lncRNA downstream 166101 15771838 ~ 15818368 (+) True G149276
TU177010 lncRNA downstream 419107 16024844 ~ 16026512 (+) True G149427
XM_026919608.2 mRNA upstream 128442 15446796 ~ 15448741 (+) True mphosph6
XM_026919666.2 mRNA upstream 131128 15444108 ~ 15446055 (+) True snx20
XM_026919664.2 mRNA upstream 131128 15444499 ~ 15446055 (+) False snx20
XM_026918774.2 mRNA upstream 143644 15427516 ~ 15433539 (+) True sall1b
XM_034307579.1 mRNA upstream 155330 15411479 ~ 15421853 (+) False rbl2
XM_026919335.2 mRNA downstream 3703 15609440 ~ 15620419 (+) True clpxb
XM_026919331.2 mRNA downstream 25318 15631055 ~ 15634990 (+) True si:ch211-87j1.4
XM_026919330.2 mRNA downstream 39250 15644987 ~ 15652631 (+) True slc5a12
XM_026918681.2 mRNA downstream 115541 15721278 ~ 15723719 (+) False svip
XM_026918680.2 mRNA downstream 115555 15721292 ~ 15724866 (+) False svip
trnar-ucg_5 other upstream 1756521 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1802000 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2223930 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2659929 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4273237 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 202253 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 202253 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 202253 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 435438 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2228500 17834237 ~ 17842535 (+) True G150589

Expression Profile