RNA id: XM_026919079.2


Basic Information

Item Value
RNA id XM_026919079.2
length 2240
RNA type mRNA
GC content 0.46
exon number 5
gene id mob2a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13170695 ~ 13215991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAAATCGGGCAGGGGACGCGGATCGGCTAGTGACAGGGTCGGTGCCGTGGTTACTTCCGGATTCCCTGTGAAGCAGAGGGGCTGAAAATGTTACTGCAGCGGCAGAGGCTCGGGAGTTGACGCTAGCATACGGGacagcagcacacagacacaccggCACCTGAGCAAACACTTCACAGTAGTTTTGACACTTACGGGCTATCGCTAGTCGAGTTTCCTTTTCTAACCGGGGCGATTTCGGCGTCTTTCACTCCGTAAGTCCATGCAGCCTGATTCTCAGCTCATCCGCCTTCTCGGATCTACACTGTCACATCTCTCCCTCGGGTTGATCGTGCTCTGAATTGACATAGTGACATTTTGCAAGTGTTGGACGCAGCGAGGACGAGTGCACACTCAGCCGGTGTGAGGTGTCCTGTAAGATAAAGCTCGGCTTAACGGGAGCTCGGCTGGACATCTCCCTCTGCCATCACCAACAACATGGACTGGCTAATGGGGAAGTCCAAAACGAAGCCTAATGGAAAGAAGCCCCCTGCCGAGGAGAAGAAGCACTATCTGGAGCCGGAGTACACTAAAGTGCGGGTGGTGGACTTTGACCTCAAAGACCTGGTGGTGCTGCCCAGAGAGATAGATCTCAACGAATGGCTGGCCAGCAACACAACGACATTCTTCAATCTCATCAACCTGCAGTATAGCACAATCTCAGAGTTTTGCACTGGTGACACATGTCAAGCCATGACGGCATGTAACACAATATACTACTGGTACGATGAGAAGGGGAAGAAGAGCAAGTGTACAGCACCTCAGTATGTTGACTTCGTCATGAGTCTAGTACAGAAACTTGTGACAGATGAAGAAATCTTCCCAACAAAATATGGTAAAGAGTTCCCTAACTCATTTGAGTCTCTGGTGAAGAAGATCTGCCGGTACCTGTTCCACGTGCTGGCACACATCTACTGGGCGCACTTTAAGGAGACGGTGGCTTTAGATCTACATGGACACTTAAACACGCTGTATGCACATTTCATCGTCTTTGTGAGGGAATTCAATCTGGTCGATCCCAAGGAGACATGCATCATGGACGACCTGTCAGAGGTGCTGTGCACTCCTCTGCCCTCCTCCCCCCAACAGAACCACGTGACTGAGAGATGAGCCACAGCCACTTAGCCCCcgagtgaggaagaggaggatgaattGAGAATGAGGGCCCTCAGGAGGGCCGGGGCTGCTCGCAGGACTCGCACACCCTTTGACTATTTAACCACCATAAGAACTAGTCAGAGAGTGAAAGAGGGGATGGCAGTGCCTCCCTTCAGCACGCACTAGTGGGGGAAAAATAGCCCCACCTACCTTCTTTGCAGTCTAACtaagaacagttttttttttttaattttttttaatttgtatttatttctgctcACATTCTTGGAGGATGTGGTGTTTTACAAGGATTTTGATTTGGCCCTTAACGTCTAATACATGAGACTAAAGCATAGTCGCCTGATCTTAGACCGTTGTAAAGAAATTTCTTGTACCCCAGTGCCCCCATGTGGAGGGACAAATTATAAAAAGGTGCCAGCTGTCCTGACCTTTAGTACTTCATGACTGGGACCTGGATCCACATTGTTACCAGTTCTCCGTTCATGTGCATCTCCCTGTATCCGccttctcttttattctcttatttcagtttcctcctggtgttttttttttttttttttttttaagttttgacAGGTCATGCAATAATTAAGCAGCAGAAATGAATGTCCAGCTTGATGCTGTAGAATGTTACTATCGGTGAGACTGTTGATGTCCATTTCTGGCCTTGACAGAAAATCTCAACACAGAGAGTTCACCATTATTGTGGCAATCGATATGCTGTATCATACCGAGGATGCATCCTCCAgggtctgtttgttttttaatcttttcttctTATGCTATCAGAGGTCATTAAAATTATATCAGCCTACACGTGTGTAGCACATGCACATTCTgcttgcatttttattaaaatagattATAACTATATAAAGAAATCGCAGGTGGGTTACGTCAAAATAGCGCCTCCATGGAGGGGGATTTGTTTCcccttcattttatttattttgactgtTTATTTGCAGGGTTCTTCAGTTCTGGCtttcattttatgtattttaatgatCTAAGTTaaagcaatttattattttaagctCTGCAAATTATACtctaataaaacatgaaaatgccAACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174857 lncRNA upstream 5905 13164576 ~ 13164790 (+) True G147630
TU174766 lncRNA upstream 72281 12994188 ~ 13098414 (+) True G147557
TU174826 lncRNA upstream 80190 13070255 ~ 13090505 (+) True G147602
TU174803 lncRNA upstream 96887 12969147 ~ 13073808 (+) True G147582
TU174771 lncRNA upstream 153838 13014961 ~ 13016857 (+) True G147559
XR_004578665.1 lncRNA downstream 113651 13329642 ~ 13333044 (+) True LOC117597924
TU175059 lncRNA downstream 144044 13360035 ~ 13371776 (+) True G147784
TU175060 lncRNA downstream 144044 13360035 ~ 13371776 (+) False G147784
TU175061 lncRNA downstream 144044 13360035 ~ 13371776 (+) False G147784
TU175083 lncRNA downstream 156881 13372872 ~ 13389196 (+) False prr33
XM_026919270.2 mRNA upstream 8766 13123143 ~ 13161929 (+) False dusp8a
XM_026919271.2 mRNA upstream 8766 13126486 ~ 13161929 (+) False dusp8a
XM_026919272.2 mRNA upstream 8766 13151746 ~ 13161929 (+) True dusp8a
XM_026919520.2 mRNA upstream 307140 12862501 ~ 12863555 (+) True phlda2
XM_026919392.2 mRNA upstream 320302 12837011 ~ 12850393 (+) False nap1l4a
XM_026918818.2 mRNA downstream 133332 13349323 ~ 13353262 (+) True zgc:172145
XM_026919512.2 mRNA downstream 140242 13356233 ~ 13358154 (+) True myod1
XM_026919136.2 mRNA downstream 156911 13372902 ~ 13381252 (+) True prr33
XM_026919734.2 mRNA downstream 249282 13465273 ~ 13470743 (+) True pdcd2l
XM_026919735.2 mRNA downstream 249282 13465273 ~ 13470743 (+) False pdcd2l
TU174750 other upstream 253441 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 1864377 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 1866749 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2622903 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 4328429 8841476 ~ 8842266 (+) True G145233
TU175114 other downstream 133335 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 545343 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 604599 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2591999 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2591999 15807990 ~ 15820156 (+) False LOC113529564

Expression Profile