RNA id: XM_034307273.1


Basic Information

Item Value
RNA id XM_034307273.1
length 1346
RNA type mRNA
GC content 0.45
exon number 10
gene id alkbh3
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18636689 ~ 18645706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAATACAGCTCTCTTGGTTTGACCTGAAGGTGGCAGACTGGCTCTACAAACCAGTGTCTGTGGCACTGTGGCCTATTTTAATATCACTGCACAAACCTGGTAATGCTCAACAAACTTTTCCTCTGATTCAGTTGAATTCTATGGGTGACAAACGTCAGAGAGCAAGAGTACAGGGCTCTTGGGCCAAACCTCTGCCCAAACCAGCATGTTCAACAGCACATGTGCAGCAAAAGTCTGGGTCATGGAAGGCTGGACCAGTAACGTATGAGTTCAATCAGCCCGCTGAtCCCCTCAGAGTGATACCTGTGGAGAAGGTGATTGAggatGCTGGGGTTTATGAGATCAGCCAGGGTCCCACTGGAGTATCCAGACTGCGGCTCCTTCCTGGGTTTTTGCCACTGGAGCAGGCAGACTGGATGTTCTCTAAGCTGTTGGCTGAGCTTCCATGGTCACAGAAGACCAATTATGGCATGATGGGTGAAGCATATGAGGAACCAAGGCTGACCTGCTGGTATGGAGAACTTCCTTACACATATTCTCGCTCCACAATGCAAGCCAACCCTCAGTGGCATCCCATCCTCCTGAACCTGCGTCAGACTATAGAGCGGGAGATCTCTCACACCTTTAACTCCTTGCTGTGTAACCTATACCGTGATGGGAAGGACAGCATTGCTTGGCACAGTGATAATGAGGCGTCTTTTGGCCCTCGCCCCACCATAGCCTCTCTCAGTCTCGGGGATACGAGAGTCTTTAGGTTCCGGAAGAAGCCTCCTCCAgaagAAAATGGGGACTACACATATACAGAGAAGGTGAAGATACCATTGAGTCATGGAACACTCTTAATAATGGAGGGTTGCACTCAAGATGACTGGCAGCATCAGGTGGCAAAAGAGTACCATGACCGTGGGCCTAGGATAAACCTGACCTTCCGAACAATCTACCCTGAACCAGTACACTCCTCCAAGAGATGATGGATAATTATAATGGAGAAGAGACACAAGAAGAGATACAAGAAGAGCTACAAGATATGGAAAATTGCAGGCCATTTACTGGTGGTGGCAGGGACGCGATAAATGCACTTTACATTAAACATACATCTTGATACTGACAAATGATATCCTTGCCTCAAACTGAATGGAAGTGGAATTCATATTTAGAGTCTTATCAAGCTTGGCTTGAAACAAAGTCAAGTATAGTATTATTTACTTAGAGTGTACTTATTAGTTTTGctggatttttgtttgttttactcaAATTGTTGAATAGCTCCTCTGTGTGGTGATTATTTTCTGACAAGGTTTTTTGTTGAACATCTAGTTCAATAAAATATGGCTTATAATGTCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578835.1 lncRNA upstream 15992 18601539 ~ 18620821 (+) True LOC113530068
XR_004578834.1 lncRNA upstream 15992 18602144 ~ 18620821 (+) False LOC113530068
XR_004578837.1 lncRNA upstream 15992 18602145 ~ 18620821 (+) False LOC113530068
XR_004578836.1 lncRNA upstream 15993 18601568 ~ 18620820 (+) False LOC113530068
TU178803 lncRNA upstream 84676 18551893 ~ 18552137 (+) True G150958
TU178948 lncRNA downstream 102121 18747827 ~ 18796239 (+) False nfat5a
TU178978 lncRNA downstream 299569 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 309343 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 464137 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 580943 19226649 ~ 19227893 (+) True G151395
XM_034307277.1 mRNA upstream 2045 18622188 ~ 18634768 (+) True hsd17b12a
XM_026919459.2 mRNA upstream 50121 18579111 ~ 18586692 (+) True api5
XM_034307441.1 mRNA upstream 59447 18568613 ~ 18577366 (+) False prr5l
XM_026918806.2 mRNA downstream 7065 18652771 ~ 18654175 (+) True c9h11orf96
XM_034307402.1 mRNA downstream 13935 18659641 ~ 18672052 (+) True ticrr
XM_034307404.1 mRNA downstream 13936 18659642 ~ 18672052 (+) False ticrr
XM_034307403.1 mRNA downstream 13936 18659642 ~ 18672052 (+) False ticrr
XM_026919904.2 mRNA downstream 13936 18659642 ~ 18672052 (+) False ticrr
TU178368 other upstream 794278 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 794278 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 794278 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2595566 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2817240 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 29304 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 75889 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 430889 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 475458 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 614918 19260624 ~ 19263893 (+) True G151401

Expression Profile