RNA id: XM_026919166.2


Basic Information

Item Value
RNA id XM_026919166.2
length 3644
RNA type mRNA
GC content 0.45
exon number 25
gene id ces2b
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13761334 ~ 13776871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGTTCAAGTGAGAGAGATCTCAGACCAAGCGCTTTCAAAGTGCACAGTAGCTGAACCTGCAGCCATGGGGACATTCTCTGTGCTTCTCTGGAGTTTATTAGGAACCAGTATTATAATCTCAGTGACAGCCAGCGATGGCCCAGTTGTGCAGACTAAATATGGTGCTCTAAAAGGTGAGTACTTGAGAGCTAAAGGGAAGGACACAGTCGTCCACAGCTACCTGGGTGTGCCGTTTGCCAAGCCGCCCGTGGGACCTTTGAGACTCTCTGCCCCTCAACCTGCAGAACAATGGCAAGGAGTGAGAGACGCCACAAAACAGCCTTACATGTGTGTGCAAAACAGGGAGGTGTCTGTGAATTTTTCAAAAAGGTTTTTTGTTACCTTGGAAGTTCCTGAAGTGTCAGAAGACTGCCTTTACCTCAACATTTACACACCTGCTAAACCAAGTGAAGATGCCAAACTACCTGTTATGGTTTGGATCCATGGTGGAGGCTTGTCCTTAGGCTCGAGTTCCATGTTTGAGGGACATGCACTGGCAGCTTATCAGAATGTCGTTGTAGTGCTAATCCAGTACAGACTTGGCTTACTTGGATTTTTCAGCACAGGGGATGAACATGCTCCAGGTAACTACGGCCTCCTGGATCAGGTGGCGGCTCTTCAGTGGGTTCAGGAGAACATCCACAGCTTTGGAGGTGATCCTGGATCAGTCACCATCTTTGGAGAGTCTGCAGGAGGAGTCAGTGTGTCTTGTCATATATTGTCGCCGTTGTCTGCTGGTCTCTTTCACTACGCCATAGCAGAGAGTGGCACGGTTGCTACAGATGCTCTTTTTACTACCAGTCCTTTATCAGTAGCTCAGTCTGTGGCTAATTTGTTTGGCTGTGACACTTCCAGTACAAAGAAGATTTTTGATTGTGTTATGCAGTTGTCAGAGGAGGATCTTTTGACAATTACCAAAAACgatgatatattctttaaagtgaCAAAAGATGGACAATTCCTTCCTAAAACTGTGGATGAACTTCTGCAGAACAAAGAGTTCAGCAAAGTGCCATTTATTACAGGGGTGACTGATGATGAAGGAGGCTTTGAAATCCTTAATTTCCTTGCTCCTCCAGGATGGACCGAAGGATTGGACAGAGAGCAAGTTATGTCATTAATGCCTTTAATTTTTCCTGATCCTGATAAATGGCTTCATGAAATAGTGCTGAATGAGTACCTGGGAACCACGAACGATCCAATTAAAATCCGAGATGGTTTTAGAGAGATGTTAGGAGACTTTTGGTTTAACATTCCTGCTCTTAAAGTAGCAAAACACCACAAAGATTCTGGAGCACCAGTTTACATGTATGAATTCCAGCACACTTTCAATGAGCTCCAGAAAAAGAAGCCAAGCTTTACAGGAAGTGACCATGGAGATGAACTCTACTTTGTTTTTggtgtatgttttttaaatggtcACTTCAGGATAGCTGGTCAGTTCACAGAGGAAGAGAATAAACTATGTAGAACTATAATGGCCTACTGGGGAAACTTTGCTCGCACTGGGTCTCCAAACGGACCAGGCCTGACCCCATGGCCGGAGTTTGGAGCTGAAGCTGAGTATCTGGGCATCGGCCTGGTGCAGAAGCCTGGAAAGAACTTGAAGGAAAAGCACTATGCATTTATAACCCAGACTCTGCCACAGTTAAGGCATGAGAAAAAAGATGGCCCAGTTGTGCAGACTAAATATGGAACTCTAAAAGGTGAACATGTGATGGCTATAGGGAAGAACACAATTGTCTACAGCTACCTGAGTGTGCCGTTTGCAAAGCCACCAGTGGGACCTTTAAGATTCACTGCACCCCAACCTGCAGAACAGTGGAAAGGAGTTAGAGATGCCACAAAACAGCCATACATGTGTATACAAAACAGGGAAGCAACTGTTGAGCTCTTTACCAGTTTATCACTCAAGGTGGAAGTTTCAGAAGTGTCAGAAGACTGCCTGTACCTCAACATTTACACTCCAGCAAAACCTGGGGAAGATGCCAAACTACCTGTCATGGTTTGGATTCATGGTGGAGGACTGAGCCTCGGTGCTGCATCAGTCTATGATGGATCAGTTTTATCTGCCTACCAGAATGTAGTTGTTGTGCTTATCCAGTACAGGCTGGGTCTGTTCGGATTCTTTAGTACAGGGGATGAACACGCACCAGGAAACTATGGATTTTTGGATCAGGTGGCTGCTCTTCAGTGGGTTCAAGAGAACATCCACAATTTTGGAGGTGATCCTGGATCAGTCACCATCTTTGGAGAATCTGCAGGAGGAATAAGTGTGTCTCTTTTGCTTCTCTCTCCATTGTCTGCTGGACTGTTCCATCGTGCAGTTGCAGAAAGTGGCACTGCATTAATGAAAGGCATTGTGGGGAATCCCTTACCAACAGCCCAGCTAGTGGCTAACATCTCAGGTTGTGACATCAGCAGCACACAAAAAATTGCTGAGTGCATTAAGCACTGGCCGACAGAGGATGTGATAGAATTTTCAAAAGAGAGGATGTTTCTACAATTTCCAGTGACCGAAGATAAGATATTTCTTCCCAAGCCTGTGGAGGAACTCCTTCAGAACCAGGAGTTCCATAAAGTACCACTCATGACTGGTGTGAACAATGATGAGTTTGGTTGGATGCTGCCTCGTTACCTTGCACCTTCAGGATGGAACGATGGGATGGATAAAGAACAAGTACTTTCATCAATGGCTGTTTTTAATTCTGAACCCCATAGTGAGTGGATTAATGAACTGGTGCTAGAGGAGTACCTGGGTTCTTCTGCTGACCCAATCAAACTTCGTGATGGTTACAAAGAGATGATGGGAGATATGATCTTTACCATTCCAGCTCTGGCAGTGGCTAAAGCCCATAAAGCTTCTGGTGCCCCAGTTTATCTGTATGAGTTCCAGCACCCACCCAGCGTTATTCAGGGTACCAGGCCCAGCTTTGTGGGATGTGATCACGCAGATGAACTTGCCTTTGTTTTCGGCATGTGCTTTGGGAATGCCCACCTAAAGGCAACTGctccattcacaaataaagaaaatgaactgTGTAGGACAGTGATGTCCTACTGGGGCAACTTTGCTCGCACTGGGACTCCTAATGGACCAGGCCTGACACCATGGCCTGAGTTTGGAGCTGAAGCTGAGTATCTGAGCATCGGTCTGGAGCAGAAGCCTGGGAAGAACCTGAAGGCTGAGCGTTACATCTTTATGACAGAGAAGCTTCCAGCGTTGGTGGCTGCGGCTAGGGAAAAGAGGGAGCATGCTGAGCTGTAGAAGACCCTGTAGCTTCTTTATATAGTCCGtctctcaagggttctttgattTAAGGGTTCAGAACCTATAAAtcttacaattttattaaaaaaacaactgtgaATTTTAAGTGTTGTTTGCCTGGAAATGAGGGGCTCAAAATGTAAGCACGTATCATTTGGCGGGGAAGGACTGTCATCATTAGCTACAGAGCAAAGATCTCACTTGGGCCATTATTCAGAAGGTTTACTGGCATATACATGGAATCATAGTTTTGTGAAACTGATAAACTGATGAATCTGTGAACTGAAAAACtgtgtaaaacaataaaaattctCTTAACCTGAAACAGTGA

Function

GO: NA

KEGG:

id description
K03929 pnbA; para-nitrobenzyl esterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175308 lncRNA upstream 11028 13748247 ~ 13750306 (+) True G147977
TU175134 lncRNA upstream 313533 13447435 ~ 13447801 (+) True G147821
TU175092 lncRNA upstream 314943 13443129 ~ 13446391 (+) True G147788
TU175130 lncRNA upstream 323953 13437114 ~ 13437381 (+) True G147817
TU175077 lncRNA upstream 324425 13436190 ~ 13436909 (+) False G147785
TU175318 lncRNA downstream 14285 13791156 ~ 13829331 (+) False fanci
TU175712 lncRNA downstream 277591 14054462 ~ 14056322 (+) True G148321
TU175720 lncRNA downstream 307463 14084334 ~ 14084563 (+) True G148326
TU175721 lncRNA downstream 308348 14085219 ~ 14085421 (+) True G148327
TU175875 lncRNA downstream 523146 14300017 ~ 14300236 (+) True G148459
XM_026919169.2 mRNA upstream 3807 13741960 ~ 13757527 (+) True LOC113529751
XM_026919170.2 mRNA upstream 3807 13741960 ~ 13757527 (+) False LOC113529751
XM_026918607.2 mRNA upstream 48860 13523622 ~ 13712474 (+) True LOC113529436
XM_034307427.1 mRNA upstream 48860 13523622 ~ 13712474 (+) False LOC113529436
XM_026918609.2 mRNA upstream 48860 13649223 ~ 13712474 (+) False LOC113529436
XM_026919348.2 mRNA downstream 14102 13790973 ~ 13809345 (+) False fanci
XM_026919347.2 mRNA downstream 14102 13790973 ~ 13808930 (+) True fanci
XM_034307214.1 mRNA downstream 114888 13891759 ~ 13912016 (+) True man2a2
XM_034307215.1 mRNA downstream 114888 13891759 ~ 13912016 (+) False man2a2
XM_034307219.1 mRNA downstream 228561 14005432 ~ 14021881 (+) True accs
TU175114 other upstream 408081 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 844080 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2455016 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 2457388 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 3213542 10543875 ~ 10547792 (+) False si:ch73-233f7.1
trnar-ucg_5 other downstream 43719 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2031119 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2031119 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 2031119 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 2264304 16041175 ~ 16041247 (+) True trnav-aac_18

Expression Profile