RNA id: XM_026919167.2


Basic Information

Item Value
RNA id XM_026919167.2
length 7308
RNA type mRNA
GC content 0.46
exon number 23
gene id atp7a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7646328 ~ 7672282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCCTTAATCTGATAATACGTGCGGTACAGGTCTTGCTCACGACATTTCATTAATTCTCAAATGGGCTAGACAGTGAGAAGAGACAGTCTCGCTGAAGGACTGGGCGTTTTATTTCACTGctgtgagtacagtgtgtgatgGTTTGTTCAGTGCTGTCGGTGTTTGAGTGTTTATCCACCGCGGAGAGTTGCTTAATGAGGAGGAGTCTCACTAACTATCTTACTAACAAGCCAAGTGTGTGAGGGTTGTTGTTAGCTAACGCCGCCGTGGATACTCTTATTAAAAAgAGGAAGCATGATGTACAGAGGCGGGCTGAGCTCCGTGACCCTGTGTGTGGACGGGATGACATGTGGCTCCTGTGTCCAGACCATAGAACAGCAGATTGGGGGACTGCCAGGCGTAATCCACATAGAGGTGTCCTTGGAGCACAAGAATGCCACAGTGATATTTGACCAAGCACTTCACACTCCGAAATCTTTAGCAGACGCCATTGAGGACATGGGCTTTGAGTCGAGTGCAACAAATGCTACTCCAGCCACGGTTGTTCAAACAGAAACGGGGCTGTTTCCTGTCAGCAGCTGTAGCGCAGaatctctctctcagctctgcCAGCTAAAGGGTGTACTGGAGGCCAAGGAGAATGGCGAAGACAGGAACCTCGCTGTCACATTCATCCCAGGTCTTGTGAGTGTCGAGAGAATCCAGGAAATGCTGAATACACTGTCCAACTCTGGCAACACTTCCACAGATCAGGCAAGTTCCCGTAGTTCTGGTAGTGTGGAGTTGCTGAAGATGCGCATTGAGGGCATGACCTGTCTGTCCTGCACCACCACCATTGAGGGCAAGATTGGAAAGTTAAAAGGAGTTCAGAAGATTAAAGtAAATCTTGAGTCCCAGGAAGCCTCAGTGTCATACTTGCCTTACTTCATCACTGTGGATGAGATCGTGAAGCAGATCGGTGTAGCAGGCTTCAAGGCCTCGGTGAAGTCCAAGCCTCGTCAGTTACAGCTCTCTTCATTGGATCGCCTACTAAATGCCTCACGATCTATGCATTGTTCTCCAGAGGGGAGCACCAGTGAGGAGGCTGTAGACTTCACCACCTCCATCACCACATTAATAAACGTTACAGGAATGCATTGTAACTCGTGTGTGGTGAACATCCAAGACAATATAGGCAAGCTGCTAGGAGTCGGCTCGGTGCAGGTCTCCTTGGAGAAGGGACAGGCTGTAATCCAGCACAATCCAAATTTAGTTACGGCACTAGAGCTACAGAGGGCCATTGAAGTGCTGCCACCAGGGAAATTTAAGACCCAGTTATCCTTATGCGAGGCCACATCACCAGCTTCTCCCTCAGAACAATCCCTCGCGACGTCATCTAACTTCTTGCAGCCGCTGGATTCTGTAGTTCAAATCCACATAGAGGGAATGACCTGTAACTCGTGCGTGCAGACCATTGAGAGCACCATCTCTCAGAAGAAAGGTGTGAGATCAGCTCAGGTGTCCCTGGCTAACCATCAGGGTACGTTTGATTACGAtccactgatcatcacatcGGAAGAACTGCGAGCAGCGATTGAGGATATGGGCTTTGATGCGTTTCTGCCTGAGACGAATTCATTGGTGCCGTCAGAAGCGAAAAGTCCTCCATCTGTACAGAAATCTGCTTCGTCCCCCGCACTCTCCACCAAAAAGGAGAAGGAAGTGGAGATCGATGCTGAGTCAGCAACAAATACACATTCCAAATGTTTCATCCAGATTGGTGGGATGACGTGCGCCTCATGCGTAGCCAACATCGAGAGGAACCTCAAAAACGAGCCTGGTATACACTCTGTGTTGGTGGCGCTGATGGCTAGTAAAGCGGAAGTGCGCTATAACCCTGGTGTCATCGACCCGCTGAGGATAGCGGAGTGCATCAAAGAGCTGGGCTTCACTGCCTCCGTTATGGAGAACTATGATGGCTCCAATGGCACCCTTGAGCTTGTGGTCAGAGGGATGACATGTGCCTCATGTGTCCACAAAATCGAGTCTAGCctaatgaaacagaaaggcatCGTCTACGCCTCTGTGGCCTTGGCAACAAACAAAGCTCATGTCAAATATGACCCGGAGGTGACGGGCCCTCGGGACATAATGAGATTGATTGAGAATTTGGGTTTTGAAGCCTCTCTGGTGAAGAAAGATCGCCCAGGAAGTCATCTGGATCACAGCAGAGAGATACAGCAGTGGCGGAGATCTTTCCTCATCAGCCTGGTGTTCTGTGTTCCTGTTATGGGCATGATGATGTACATGATGGTGGTGGACCACCAGATTGAGGTGATGCACCATCACAACGCCACACCGGAGGACAGGCAGATGTACCACTCCAGCATGTTCCTGGAGAGACAGCTTCTCCCTGGCCTGTCCATCATGAACCTGCTCTCCTTCCTTTTCTGTCTGCCTGTGCAGTTCATAGGAGGCCGTTACTTCTACACCCAAGCATACAAAGCACTGAAGCACCGGACTGCGAATATGGACGTGCTGATAGTCCTGGCCACTTCTATAGCCTTCACTTACTCTGTGGTCATTCTGATGGTGGCCATGATAGAGAAGGCAAAGCTCAACCCCATCACCTTCTTTGATACACCACCAATGCTCTTTGTGTTCATCTCACTGGGAAGGTGGCTGGAGCAAATAGCCAAGAGTAAAACATCAGAAGCTCTATCCAAGCTAATGTCCTTACAGGCGACCGAGGCCACTGTTGTCACTTTAAATGAGGACACAATGACTGTTTTGAGTGAAGAGCAGGTGGATGTGGAGCTGGTGCAGAGGGGTGATATAGTGAAAGTGGTGCCCGGTGGAAAGTTCCCAGTAGATGGGAGAGTAATTGAAGGGCACTCGATGGCAGACGAGTCGCTCATCACAGGTGAAGCCATGCCTGTGACGAAGAAGCCAGGAAGCACAGTGATCGCAGGCTCCATCAATCAGAACGGCTCTCTGCTGATCCGAGCCACGCATGTGGGCACAGATACTACACTCTCCCAGATTGTCAAGCTGGTGGAGGAGGCACAGACCTCAAAGGCTCCCATTCAGCAGTTTGCAGATAAGATCAGTGGCTACTTCGTCCCCTTTATTGTAGGCGTCTCTGTGCTCACCCTCATTgcctggattgtgattggttttGTAGACTTCTCTGTGGTGAAGAAATACTTCCCAgatTATGATAGGAGTGTGTCTGAAGCAGAGGCGATCATCCGCTTTGCCTTTCAGGCCTCTATTACTGTGCTTTGCATCGCCTGCCCTTGCTCTCTCGGCCTGGCGACCCCCACAGCAGTGATGGTTGGCACAGGAGTCGGGGCACAGAACGGCATCCTCATCAAAGGCGGGGAACCTCTTGAGACGGCACATAAGATTCAGTCTGTTGTTTTTGATAAAACGGGCACCATTACCTATGGAACCCCCAAAGTAGTGCAGGTGAAGATGGTTGTGGAGGGGAACCGGATGGCTCGCTCCAAACTACTAGCGATTGTGGGCACGGCAGAGAACAACAGCGAGCATCCGCTAGGGGCCGCAATCACCCGCTTCTGTAAACAGGAGCTGGGCACGGAGTCACTGGGCACTTGTACTGATTTCCAAGCAGTACCGGGTTGTGGGATCAGGTGCCAGGTTAGCAACATGGAGAGCCTGCTGAAGAGAGAGGACAGTGACGGTGAGGAGAATGAGCGCAACGCCATCCTCGTGCAGATCAGTGACCCCAGAGCCAGCTCCAGCTCTCACCCGCTCATCATGGACCCAGAGCCACTGACTTTGGTGCAGTCAGCCTCGTACACAGTCCTGATCGGTAACAGGGAGTGGATGAGACGCAACGCCCTGCACATACGGCCTGAAGTGGACGACGCCATGATCGAACACGAGAGGAGGGGGCGAACTGCTGTACTGGTGGCTGTGGATGGTGTGCTGTGTGCCATGGTTGCCATAGCAGACACGGTGAAGCCAGAAGCTGAGCTGGCTGTACAAACTCTCACCTCTATGGGCCTGGAGGTGGTGCTGATGACTGGCGACAACAGCAAGACAGCACGAGCCATTGCAGCACAAGTTGGCATTAGGAAGGTGTTCGCCGAGGTGTTGCCCTCTCACAAGGTGGCAAAAGTGGAACAGCTGCAGCTGGCAGGGAAGCGCGTGGCCATGGTGGGAGACGGCGTGAACGATTCGCCAGCTCTGGCCAAGGCAGACGTGGGCATCGCCATTGGCACGGGCACTGACGTGGCTATTGAAGCAGCAGACGTGGTGCTCATCAGGAACGATCTCCTGGATGTTGTTGGGAGCATTGACTTGTCAAAGAAGACAGTCAAAAGGATCCGTATTAACTTTGTATTTGCACTAATCTACAATCTTGTAGGAATTCCTATTGCAGCTGGTGTGTTCATGCCGATAGGACTGGTGCTGCAGCCGTGGATGGGTTCTGCTGCTATGGCAGCTTCTTCTGTGTCTGTGGTCCTTTCCTCCCTTTTACTCAAATGTTACACTAAGCCCAGTGCTGAGAAGCTGGAGCAGCAGATATGCGGGCAGCGTAAACAGGGCAGCCTTTCAGACGTCAGCGTTCACATTGGCATGGGCGAACTGCGCCGTCCTTCGCCCAGACTTAGCTTACTCGACCGGATTGTCAACTACAGCCGAGCCTCTATCAACTCCCTGCGCTCAGACAAGCACTCACTCAACAGCATAGCCCTGAGTGAGCCTGACAAACACTCGCTGCTCGTAGCTGGAGCTCACTGTGATGAGGACATCGTCTGATGGGGCGTTACCAAGAGCAACATGACTACTTAACACACCTCAATGCCTGTAGTCTGTAGGGGAGGAGCCAAAGTGTgatctcatgcacacacacacgtcacaccAGTTCTGCTTAAAGCTGCATGACTCGCTGTGGCATCTTCTCACTAGAAGTTCACGCACCAGTCTCCATGTCTCTGCGGCACCCTGTGTGTAACCTGTGTGAACCTAGAGCCAAAACAAGGAAAAAGTAGGAACTCTATCAGAGATATGATGATCACgtggctgtttttttaaaatgacaatcTACACAGCAACCCAAAGAATTTTGGACATGCCACATTTTATTTCTGCGACAATTGTGTTGAGTTTTAagactttaattaaatatttatgatgtcacttatttatactttataatgTAGGAAATGTAACAAAGGAAGTTAGagatattataattttatttatccaGATATTTTTCCACTGACAATTTTGCCTCTGATCAGCAAATGTACATTAGTTACGTTTACCATGCTCAGTGTTCAGATACTCAAACTTCAATAGCCTTGGTGCTGCTTTTCTGACTCCATCCTCAGAGAGTAACTCAGTAAAGTTTTTGATTTTGGGCCTTGAATATCGACATAAGATATAACACATTCCAAAGATGGCGTTTGACCTCTTACCTctaaagaagaaatgaaaaacctTGAGTGAAAATTGCTTAATTAAAATTAGTAAGCCTGGATGAAACAAATCCTGCAGGCTTTCTCAGTCATATTACTTCTTTGATAtagcagccttttttttaaatttttttttctttctttttttttttttttttttaaatacatatgtTACTAATGAGCGAGGTGGATACTCAAGCCCTTGCTGAAATtattagaaggaaaaaaaaatcacatagttgctatttatttattcagatatGCCTTGATAAAGTAACCGAGTCAGTAGTAATTGTAAGTGCTTCTGTCACTGTTATGGTTTCTCATTTATAAGGTTTTCTacactttctttttcaaatttcatCACCTGAATTGTCCCTGTAGCTCAACCCAAATCACTACTTAAGCCAAGTTAAAATAATGTGCCGGAAAATCGAGAAACTGCCCATGACGATTTGAATCATCTTACGATTTAGAGTTGATTTCTACCAGATTCACACTTTTCATCACTCACTGATTACACTAAAGTCATTGGGAAGAAAGCTGCTAAGGAAATCAAACTTTGTAAGTTTAATTAGATCTAATTGCATTAGGGTTCTGTTGTGGTGGGTACACCAAGGTGACAGTCAGGTGACAAGTTGGGATAAAACACAATGGTGatttattaacaataaataaacaataaacacctCTGAAGAAATTACTCAATCAAGAGAAAGATAGTGGCAGCTTATTAGCACAGGTTTCTAAATTAGGGAAGGGGTTTACATAatagtaggaaaaaaaaattaaaaacaaatggatCACATTTTATCAAACACTTATACAGTGcgttatataaaataatgttaaccAATtaacatgctaatgctaatcgGAGAGACCATTTTCAGAATTTTTAGAATAATATGAATGTCCTTATTTTCAAACCATAGAGAGTGATGGATGAAAGTAGATTGTTTTTGAGCTGCTATTCGTGCATTATGTTGAGGCCATGgggtctggttttttttttttttctttttcttttctcttctctttttcccctACTCAGTGAAGGATGCTTCTGGTTTTAAAGTTACACATTAAAGTTACAGCAAACCCCTAGGCTTTAAAATATTGACCATGGGGAGGGGAAaagaatgaatattttataatcacacAGTGGGAAAGTAACTTTATCCAGTTTTTTTGCCAATATAATATcaggagttttaaaaaaaaaaaagtcaactttattatcattatgtaTATGACACAATGAATTGAAGTAGCAAGCCCTTAAATAAGGCATATGAGTAAGTTGTAAATGAGTATTTGTGTATCTTGTATGATTCTGTGTATCTTTTTGCCAGTCTGCTCCATTGCCTGCTCTTACAGATTGTTCATTTCTTAcattaaattaagtaaaattTGTTTCAGTTGAGCAACACACATTAAACCCAGCTTATCAGAATCTACAGCTCCTTCAGAGACAACTGACTATTGTTTGTTGAGTTTCGTCTGGCATGTGTGCCTTTTTCTGAGCAATGAGCTTGTGAAATATATCCAACCCTTAAAGTTCCCTCTGGCGGGGAACAGGGGAAGTTGTGTTACTGTgccttttttttacacaatcgCTATTTTGAAGGACTTTCAAGGCCCCAGTGGAGCAAATGAATTGAAATTTAGGCCTTGTGTGCAGTCAATGTCTTTATTAGCCCACAGTGTTTTCACTGCAGTGAGCTGCTGTATTTATTGCTCTTCTTGCCTGGTGTTCTGTAGGTTAAAGTCAGTTTGAAGCTGTGAGTAAATGTGATGTATAGTACACAAATTTGGCATATTTTATGGTTGTTATCCAACACAATATATCTAATAAACTACAGCTTATGag

Function

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG:

id description
K17686 copA, ctpA, ATP7; P-type Cu+ transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171371 lncRNA upstream 67967 7578128 ~ 7578377 (+) True G144665
TU171367 lncRNA upstream 69556 7576060 ~ 7576788 (+) True G144661
TU171240 lncRNA upstream 70853 7575108 ~ 7575491 (+) True G144568
TU171231 lncRNA upstream 197813 7447870 ~ 7448531 (+) False gabra6a
TU171170 lncRNA upstream 225524 7418761 ~ 7420820 (+) True G144523
TU171439 lncRNA downstream 13466 7685748 ~ 7688153 (+) True G144715
TU171450 lncRNA downstream 31799 7704081 ~ 7704763 (+) True G144726
TU171516 lncRNA downstream 343378 8015660 ~ 8018082 (+) True G144782
TU171518 lncRNA downstream 343378 8015660 ~ 8017911 (+) False G144782
TU171648 lncRNA downstream 370813 8043095 ~ 8043297 (+) True G144891
XM_034307125.1 mRNA upstream 72115 7536335 ~ 7574229 (+) False atp10b
XM_026918736.2 mRNA upstream 72115 7537474 ~ 7574229 (+) True atp10b
XM_026919243.2 mRNA upstream 120994 7467772 ~ 7525350 (+) True gabrb2a
XM_026919245.2 mRNA upstream 122430 7467772 ~ 7523914 (+) False gabrb2a
XM_026919624.2 mRNA upstream 179792 7447880 ~ 7466552 (+) True gabra6a
XM_026918884.2 mRNA downstream 2259 7674541 ~ 7678733 (+) True sowahab
XM_026919694.2 mRNA downstream 8304 7680586 ~ 7685537 (+) True gdf9
XM_034307405.1 mRNA downstream 116693 7788975 ~ 7797755 (+) True LOC113529727
XM_026919983.2 mRNA downstream 142961 7815243 ~ 7832568 (+) True zgc:92242
XM_026919984.2 mRNA downstream 142980 7815262 ~ 7832568 (+) False zgc:92242
trnaa-agc_7 other upstream 11774 7634498 ~ 7634570 (+) True trnaa-agc_7
trnaa-agc_6 other upstream 26335 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_5 other upstream 31767 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_4 other upstream 34502 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_3 other upstream 37231 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_8 other downstream 367317 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_10 other downstream 369953 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_11 other downstream 372056 8044338 ~ 8044410 (+) True trnaa-agc_11
TU172076 other downstream 1169194 8841476 ~ 8842266 (+) True G145233
TU173183 other downstream 2871593 10543875 ~ 10547792 (+) False si:ch73-233f7.1

Expression Profile