RNA id: XM_026919170.2


Basic Information

Item Value
RNA id XM_026919170.2
length 3309
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC113529751
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13741960 ~ 13757527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCCCCACAATGCACCGCGCTGTCCCGGAGCCGTTGCCATGTTAGAGCAGTATGGGGGAGTTTCCCGCAGAATGCGCCGTTACACAGCGTGAAAACTTTTCGCCCTGCTCGTTAGTCCGCGCGTTTCATTCTGCCTCCTGCTACACGAAAAcctccatgtttgtttacaAAGCCTTTGTAACGGATAACCCCAtccagcgagtgtgttaatagGCAGGAAGATGAACAAATCTGCGTTCCGTTGTCCATTTCTTCAGCAAACTTCAGACGCGGTAACGTCAGGTCTGGGGAAGACGGCCAGGACGGGTTGTTTTCTTCAGGCTGCAGAGTAAAGTCTGCAGGAATGAGGGAGCAGAGCTAGAGGCCCAACTCTGCACCGCCTGTGTCAGGATGGAGCTGAAGGTCTGGGTGGATGGAATCCAGCGTGTGGTCTGTGGAGTCACAGAGGCCACCACCTGTCAGGAAGTGGTCATTGCACTGGCCCAGGCTATAGGTCGTACTGGACGCTACACACTAATCGAGAAATGGAGAGATTCTGAACGACACTTGGCTCCTCATGAGAGCCCTGTGGCCTCTTTAAACACTTGGGGCCAGTATGCTGGTGATGTCCAGTTCATTCTGCACCGCACTGGACCTTCTCTCACAGAGCGCCCTCCATCTGAGGGGCCCTCTGTCTCCCGGGGCCCCGAGCGTGGCCTGCACCGCCAGAGCCTCCCTATTATGGCTAAGCTCAGAGCCCAGGGTGAGCGATCACTCCGCCGTCGTGAACCACGCCGCAAATCCCTCACCTTTACTGGGGCGCCACGTGGCCTTAGAGACATTCTTAATGGCACCAGAATTGGAGACAGAGACTCCAAGCGCTGTGTTGTTCTGATGAACAGTGCCCCCCAAAGCCTGTCGACATCCCCACGGCTACCTTCAAGTCGTGTGGAAGAGTTGACCCGCCTAGTGAGGCTGCAGAGGGAGTCTCTGACTGTTCTGGAACGCCGAACGGAGGTATGCGATGCAGAGCTGCAGGCATGGAGCCAAAAGAGATCAAGCAGCGAGGACTCCTGGGCAGTCATGACTGAGGAGATGGTGCGGCTAGAGCAGCAGCTGTGTAGGAACCAGGTGGAGGTTGAGGAGGAGGAATTTTGGGCCAGCGAGCTACAGATTGAGCTCGAGAGCGAGAGGCAGCTGGAGGAGCGGCTGCAAGAGGTGCGCACTCGGCTCCGAGCCTGCGAGACTGAGCTGGACCAGAGGCTGGCCCGTCTGCATGGCATGGAAGCAGGGCTGGAGGCCCAGCGGCAGCAGGAGCAGACGAGGGAGAACCAGCTGTGGAGTGAAGGAGAAGTGAAGGCCAGGCTGCAGACGGTGAAGGCTGAACTCAAGGCTCAGGCTCAGCACACAGCGCAGCTGGAAAACAGCTGCAGGGCTGTGGAGAGGTCACTGAGTCAGTCCAGTAAGAGACTACAGGAGAGTCAGTATGAGCTTGAGCAACTAACTAAAGAGCTGAGGCAGGTCAATCTTCAGCAGTTCATCCAGCAGACTGGCACTAAAGTGACTGTGCTGCCTGTGGAGCCCAGTGACATGGAGGCCAGCGTCCCCCCTGTGCCTCAGGAATCAGATTTTGCAGCACTGACTGGTTCTCTGAAGCGCCCAGGCCCGTCTCATGTGGTGGGAGTTAACCTGCGGGTGCTACACAGCCCCATCACCTCAGCCCTCAACCCTGAGGGCATCTACGTCTGAGGAACAGAGCAACACCTGCAACCACCGTTACACATCCGCTGAAAACAACAGTTTTTTAACAAGTTCATGTGATTTCATAAAAAAACTGAGTGATGCATCAAGATTGTTTTGTAAGGCAGTCATAGGAAGTGACTTGTTGGTTAAGGCTGGTAGTTAATGTTTGTCTTTGCAAAGTTGGACAGCCGATGGAGCAACATAGTAAGAAGCATAAAGGGGAAATGAAGGTATACATTATTTTGGTAATGGTAAACTGGAAATATACCTCAACCCAAGACCCATCTGTTAGCTGTAATATCTGCTATTAATTCTAATGAATTCTGATAAAAGAATGTTTATTTCCTATATGGAGACTGTGGAGCAACAGGCCTGTATGAGGAAGGACATATTAGGGATGAGTTACTTCAgaaatgtgaatatatttttgcaaagcTGTTTATTTGTTACTTCAACCACAAAGTGAGTTGTTCATATAAGCAACATGACACATGCACCTTTCTGTCTTTACTGTGGCATCATATTTTATGCTGAGGTTTATATTTTGCCACAGCTGGTATTATATTTCTTTGCATATTCcacttttagatttttttttttttagcaatgttGAGCCAAAGATGCCTgctaatatgtatatttttggtAGCCATAATCAAGCTGCTTGGATGCAGTTTTATAGCAATACATCTCTGGCTATATAATTAGCTAATTTTCATCATGTTTACCCTTTAGGTTTTACTAATGTACAGCTTATGCAAGACAATTTGCCATGCACATGTGTAAAACTGAGCTTTGTGTTAGTATTAAATAAACTTTGcagtattatagtatattattctCGACAAATCATAGATTGGGCTCTGTCAATTAACCAGTGTATAACTGTTATAATTGTAACCAGTGCCTTAAGTCTTTAATGAAGCATTAACATGATCAAAACCAGATCAAAATGGGGAGCTCCCAAGTCTGTTTATATGTGAAATAGATGGTGATGGTGAACTAACATGCATCTTTTATcttatataaaaacacactggCTGTGTTTGAAATCCCTTGTTTGTTtactcattcatttcatttcattttctttacacAAAACAATGATTTGAGGACAAGTTTGTGAATCATGGCATCAACCAGATTCAAAAGCTTCAAGCATGCTAGCATAGCATTTTATGTACCATTATTTGTAAAGGAATGAAAGCTTAGTGCTCTCTGGTGccattttaataaaaggcaTTGTATATAGACTATAAATCAAACATGTACTGTAAATGTTGTTCTATATGAACTAGATGGAAATTCAGATTGGGCAGTAGTGTTATCCACTACAGGTTGATGCATGAAATTAATAGGGATTCCAGACACAGCCGTTGTTGCTTTATGCTCACTGCTGcgttttatgcattttatgttCTTGTGAACAGTGTCAACTTTtagtttctttaaatatttttttctactttgaaactgtattttaaaaatgtggtaATGCCATCCATATGTAAATTATACATATTGCTTATAAAgctctttgtgttttattgcactgcatttcaacattaaaatcaaattaacacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175134 lncRNA upstream 294159 13447435 ~ 13447801 (+) True G147821
TU175092 lncRNA upstream 295569 13443129 ~ 13446391 (+) True G147788
TU175130 lncRNA upstream 304579 13437114 ~ 13437381 (+) True G147817
TU175077 lncRNA upstream 305051 13436190 ~ 13436909 (+) False G147785
TU175078 lncRNA upstream 311187 13414301 ~ 13430773 (+) False G147785
TU175318 lncRNA downstream 33629 13791156 ~ 13829331 (+) False fanci
TU175712 lncRNA downstream 296935 14054462 ~ 14056322 (+) True G148321
TU175720 lncRNA downstream 326807 14084334 ~ 14084563 (+) True G148326
TU175721 lncRNA downstream 327692 14085219 ~ 14085421 (+) True G148327
TU175875 lncRNA downstream 542490 14300017 ~ 14300236 (+) True G148459
XM_026918607.2 mRNA upstream 29486 13523622 ~ 13712474 (+) True LOC113529436
XM_034307427.1 mRNA upstream 29486 13523622 ~ 13712474 (+) False LOC113529436
XM_026918609.2 mRNA upstream 29486 13649223 ~ 13712474 (+) False LOC113529436
XM_026918610.2 mRNA upstream 29486 13649274 ~ 13712474 (+) False LOC113529436
XM_026919961.2 mRNA upstream 219165 13473201 ~ 13522795 (+) False banp
XM_026919166.2 mRNA downstream 3807 13761334 ~ 13776871 (+) True ces2b
XM_026919348.2 mRNA downstream 33446 13790973 ~ 13809345 (+) False fanci
XM_026919347.2 mRNA downstream 33446 13790973 ~ 13808930 (+) True fanci
XM_034307214.1 mRNA downstream 134232 13891759 ~ 13912016 (+) True man2a2
XM_034307215.1 mRNA downstream 134232 13891759 ~ 13912016 (+) False man2a2
TU175114 other upstream 388707 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 824706 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2435642 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 2438014 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 3194168 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_003403080.2 other downstream 3807 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 63063 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2050463 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2050463 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 2050463 15807990 ~ 15819573 (+) False LOC113529564

Expression Profile