RNA id: XM_034307289.1


Basic Information

Item Value
RNA id XM_034307289.1
length 1744
RNA type mRNA
GC content 0.48
exon number 9
gene id wwox
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18806926 ~ 18979459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGCCTGTTTAGTTTTGGTCATAGCATCTGAATGTCTTCGCATAAATATAGCAGTCTTTGAGACGGAGACTTTTGTATTGTAGCGTAAGGAGCACAGCGCTGCCTTCATATCCCAGAATCCATTGCGCCCAACGTCACCCATGTGGTTGCGGAAGTAGAAGAGCAGAATTAAAGGCAGCGTTTCTTAGTTGACTTTTCAGCAGACTCATAAACAAACCGGCCAGGCTTTCATGGCTGCTCTGAAATACGCAGGAATGGATGATACTGACAGTGAGGATGAGCTTCCTCCTGGCTGGGAAGAGAGGTCCACGAAGGATGGCTGGGTTTATTATGCCAATCATGAGGAGATGAAGACACAGTGGGAGCATCCTAAAACTGGAAAGAAGAAACGCTGTGCAGGAGACCTGCCTTATGGGTGGGAGCAGGAGACGGATGACAAGGGTCAAATATTTTATGTTGACCACATCAATAAGAGGAAGACATACTTTGACCCTCGGCAGGCCTTCACCATAGAGGATGTTCAGGTGAAGCCTAAGCGCTATGACGGCAATACGGCTGCGCTGGATGTCCTGCAGGGTCATGATCTTTCTGACAAGGTCATAATCATCACGGGGGGTAATTCTGGTATCGgTTTTGAGACAGCGAGGTCGTTTGCCCTTCATGGTGCCCATGTGATCTTAGCCTGCCGGAACAAAGCTCGCAGCAGTAAAGCAGTTAACCGGATCCTAGAGGAGTGGCACAAAGCTCGTGTTGAAGCCATGACACTGGACCTGGCATCATTGAGAAGTGTCCGAGAGTTTGCAGAGGCTTTCAAAGCAAAGAAACTgccCCTGCACATCCTGGTGTGTAATGCGGCGGTGTGTACGCAGCCATGGCGTCTGACGGAGGACGGGTTGGAGTCTACCTTCCAGATCTGCCACCTGGGCCACTTCTACCTAGTGCAGCTGCTGCAGAACGTGCTGCGGCGTTCAGCTCCTGCCCGTGTGGTAGTGCTGTCCTCCGAATCTCACAGGTTCACAGATCTGGTGGACTCTTGTGGAAAGGTGGATCTGTCTCTGCTCTCGCCACCCCAGAAGGAGTACTGGTCCATGCTGGCCTACAACAGAGCCAAGCTCTGCAACATCCTTTTCTCCAATGAGCTGCACCGTCGCCTCTCTCCTCATGGGGTCACTTCCAATGCTGTGCACCCTGGGAACATGATGTATACGTCCATCCACCGCAGCTGGTGGCTCATGACCTTCCTTTTCAATCTGGCACGCCCCTTCACTAAGTCCATGGTACTGCTCCTGCAGAAGAAAATCTCCTTGAGTAGATGTGTGATCCTGAGTAGACATAAGTACTCACCCTGAAATGCTGCCTTTATTTCTGGAACCTGTGAAGAGAAACATAATTTTGATTACATTTCTAAATTCAGCACATCCTTTGATATCACGATATATGATTTAGATGTGCTTTTGCTGAGTTGAGAAAGTCATCTACACAGCAgaactgcagtttttttttatatcaggcTAATAACTATCTCCTTTTCCATTGCTTTCTTTAATCTTATCTATAAGTAGAGTCGGTTGTCCCGGAGTTGTACGTTAACACTGTGTTAGATCTGTACAGTGAATGAAGATGGTGTCATTTCGATAGGGGAAAATGGTTCTTAACAGCTATGAAAGAATGGCAGTGCTGATTATAATAATGCCTGCCCGCTTCCTAATATGGAAATGTGGCTGAACCATTATGGAGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178948 lncRNA upstream 10688 18747827 ~ 18796239 (+) False nfat5a
XR_004578835.1 lncRNA upstream 186106 18601539 ~ 18620821 (+) True LOC113530068
TU178978 lncRNA downstream 85940 18945275 ~ 18945942 (+) True G151093
TU178969 lncRNA downstream 95714 18955049 ~ 18997932 (+) True G151084
TU179021 lncRNA downstream 250508 19109843 ~ 19110973 (+) True G151134
TU179305 lncRNA downstream 367314 19226649 ~ 19227893 (+) True G151395
TU179336 lncRNA downstream 458651 19317986 ~ 19393161 (+) True G151417
XM_026919555.2 mRNA upstream 804 18799343 ~ 18806123 (+) True hprt1l
XM_026920021.2 mRNA upstream 10668 18777781 ~ 18796259 (+) True nfat5a
XM_026919487.2 mRNA upstream 37508 18761103 ~ 18769419 (+) True si:ch1073-174d20.2
XM_034307139.1 mRNA upstream 52281 18728990 ~ 18754646 (+) False tdrd12
XM_026919585.2 mRNA downstream 261816 19121151 ~ 19125201 (+) True faap24
XM_026919998.2 mRNA downstream 267544 19126879 ~ 19140940 (+) True slc7a10b
XM_034307366.1 mRNA downstream 289732 19149067 ~ 19154118 (+) False zgc:153293
XM_026919609.2 mRNA downstream 289732 19149067 ~ 19154108 (+) True zgc:153293
XM_026919610.2 mRNA downstream 289732 19149067 ~ 19154106 (+) False zgc:153293
TU178953 other upstream 82241 18721595 ~ 18724686 (+) True urahb
XR_004578809.1 other upstream 123499 18675010 ~ 18683428 (+) False rfwd3
TU178368 other upstream 964392 17834237 ~ 17842535 (+) True G150589
XR_004578793.1 other downstream 217260 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 261829 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 401289 19260624 ~ 19263893 (+) True G151401
XR_004578759.1 other downstream 490283 19349618 ~ 19384904 (+) False srpk2
TU181223 other downstream 3193279 22052614 ~ 22058158 (+) True LOC113529593

Expression Profile