RNA id: XM_026919195.2


Basic Information

Item Value
RNA id XM_026919195.2
length 6428
RNA type mRNA
GC content 0.45
exon number 12
gene id brd1b
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18491745 ~ 18503991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCAGTGGGGTTACGGTCTCTTCCGTGTTTTACAGCTGGACGTAGCGACGTCTTACGTCACACATGGGCAGGGATTCGCACCGCCGCATTGTTAGGGGCAAGAGAGGCGAGCTAGCCTGTTAGCATATAGCTGCATCCTAGCCTATCTACAGTATGTCCTACTATTGAACAAACCGACCGCATTAAAATAGACGAATGGTTATTTTAAAGAGCGGTTTAATGCGACTGAGAGCGCCTGTCGCTGAATTGAAACGGTTGTCCTGGACACTGCACTGTATCATTCAGATACAATTAAACGCTCGAGCGGAACCAGTTGGATGCTAAAGTAGTTAGCGTGGACTGCGTGTGGAATTAGCCGCTGCTATCCTGCAGGCCCTGCACACCGCTAGCTACAAGCTAGCCTGCCTTCGCGTTGCTTTGAAGGCTTACTTGGGGATTCCTCGAAGCAGAAGGTGttgaaaatgaggaagaaaggGAGACATCATCGTGTGGCCACACCACAAAGGCCCCCATCGCCCATCAAACCCTCAAGAAACCGTGAGACTCTAACCTACGCCGAGGCCCAGCGGATGGTTGAGTTGGAAATTGATGGACGTGTTCACCGACTCAGCATCTACGACAAGCTCGATGTAATCAGCAGCGATGATCCTTTAGCTCAGGAGATCAGTGAATGCAACAGTAACAAGGAAAACACAGAGGAACCCCAGCAGGTTTTGGTGCGTTCTGTGCGGCTCAAAAACAATCAGCAGAAGAAGAGTGCTGCTCTGAACACAGGGCAGGGTTCTCCAGCTCAGGGCAGGCTACCAGAGCCGAAAATTCGAATGATTGAATATAATCTTCCAGCTGTGCCGCGAAGACCCTCTACTTATTACTCTCACGTGGAGAAGACCTTAGATGAGCTGGATGAGGAGGTGGAATATGATATGGATGAAGAAGATTATGCATGGTTGGAGCTGATCAACGAGAAGAGGAAGAGTGAGGGTTTCAGTCAGGTTTCCCAGAATGTTTTTGAGTTCCTAATGGACCGCTTTGAAAAAGAGTCCTTTACTGAGAACCAGGGTCAGGGAGATCCACAGTCTCTCATTGATGAGGACGCAGTCTGCTGCATCTGCATGGATGGAGAGTGCCAGAACAGTAACGCTATTCTGTTTTGTGACATGTGCAACCTAGCAGTGCATCAGGAGTGTTACGGGGTGCCACACATTCCAGAGGGCCAGTGGTTGTGCCGGCACTGTTCACAGTCTCCCTCCCAACAAGCAGAGTGTATTTTTTGTCCCAATAAAGGTGGAGCACTTAAGAGGACAGATGATGATCGATGGGGCCATGTAGTTTGTGCTATCTGGGTTCCTGAGGTTGGTTTTACTAACACCGTTTTCATTGAGCCTATTGATGGTGTAGCTAATATTCCACCAGCTCGTTGGAAACTGACCTGCTACCTCTGTAAAGAGAGAGGGGTTGGAGCCTGCATTCAGTGCAGCAAGGCCAATTGTTACACCGCCTTTCATGTGAGCTGTGCTCAGAAAGCGGGCCTGTACATGAAGATGGAGCCAATTAAAGAGGTGACTGATACAGGATCCACCACATTTTCAGTGAAGAAGACAGCCTATTGTTGTTCTCATACTCCTAGTGGATGCACCAGGAGGCCTCTTACCATTTATGATGAAGCTCAACCCAAAAACAGTCTTTGTCAAAaggacaaacaaaaaagtagGAGGGCAAAAGTGAAGGGAtgccagaagaagaaaaataagaaagtaGATGCACAGTCAGTTCCAGCGGTTCCAGCTGTTTCAGTACCTAGTATAACACCTAAAAGCTTCAACACTATCCTCAACCAAGTCTCTGTTCAGAAGAAAAGACAGTTTGTGGAACGTGTTCTCAGTTACTGGATGCTGAAGAGGCAGTCAAGAAATGGCGTGCCCCTGATCCGACGCCTGCAAACAACCATCCAGACTCAAAAACTATCACGATTGGAGCAACATGAGGAGGATTGCCAGGCACTAAAGGAGCAGCTGAAGGATTTGCATCGTTTACGCCATGACCTGGAGAGGACACGTTTGCTACTGGAACTCGTACGGAAGCGAGAGAAGCTCAAGAGAGAGCAGATGAAGCTTCAGCAGTCAGTGCTGGAGATGCAGCTCACTCCGTTTGCTATCATGCTGCGAGCTGTGTTGAACCAGCTGCAGGAGAAAGACCAGTCCAGGGTCTTCGCCCAGCCAGTCAGCATCAAGGAGGTCCCAGACTATCTTGATCACATCAAGCATCCAATGGACTTCTCTACCATGAGGAAACGCATTGATGCGCATGAATACAAGAGCATGGATGAATTTGAGGATGACTTTAACCTCATCATCAATAACTGCATGACATACAATGCCAAGGAGACCTTTTTCTACCGTGCTGCTGTGCGCCTGCGAGACCATGGAGGAGCTATTCTCAGGAAGACTCGACGAGATGCGGAGAGAATAGGGTTTGACTTTGCCAGTGGGATGCATCTACCCGAGCCACCTAAAATAGAACCTCATCCATTGCTGACATGGGAAGAGGtggacCGGTTGTTAAATCCTGCTAATCGACTGCACATGTCTTTGGAAGTGCAGCTCAATGCACTGCTAGAGATGCTTGATTTAACGAGTGCGATGAAATCTAGCCCATCACGGAGCAAGCGCCTCAAGCTCCTCAAAAAAACCATCAGCGATGTGCGGCTTGAAATGAGCCAGAAGACTACATGTCCTCCCTCAGAACAGAGCCAGTCCCATGAGAACACACTGCTCCCTGTTCCAGAGTGTTTGGAAGAAGTTGACAAGACATTACCTCCCAAACTAGAGCCATCAGCTTCTGCTCCACTTGTCACAAATTCAGAAAATATCTCTGAGCCTCCTGCACTGAAACCCATGGACCTCAGCCCTGAGAAATGCCAGAGAAAGATCACGCTTGATGGCAAGATGCTCTCTACCTCACTTTTAAATGGACTTTCCTCTGATCTGCAGCCCTCTGAAAACAACGTCATGGTGGCTACTTCCACTCTCACAGAACCAGCAGGCACAATTAACAGAAGGACCTCAGTGCTCTTCCGGAAGTCTAAGAGTATGAGCCCACAGAAACCAGTAAAGACGGGAGAAGCTTCAGTGGACTGCCCTCAGCTTGGCACCAAAACATTCCTCTCAGTTGTGATTCCACGCCTTGAGACGCTGCTTCAGCACAGGAAGAGAGCTCACAGTGGGGACAGCCAGGACGGAGATGAAGGGGAACGCCCAGCCAAGCGTATTGATAAagGTTTCTCTAATGGCTGTATAGTACTGGAGCAGCAAAAACAGCTGAGCAGCAGAGTCCTAGAACCTCGCCGTCGCTGTGCCTCCGAGTCCAGCATCTCCTCAAGTGGCAGCACTAGTCTGCTGGACAGCACCAGTGCTGTCAGTCATCCAAAGTGCGGTAAAGGGAAGCAGGCAATGGCACGGCGAAACACAACGGATGACCGAAATGAGCTGATTGCATGCATGGAAACAGGGACCCTTTCCAAAGCAAGCAAGCTGGCATCTGATCATAGACCCACAGATGCCCCGAGCGGGCTTCCATCGCAACGGCATGTTCATACCCACTCCTCCACGGGACGTGCTCAGAGTCGGCGAGCTGATGCAGTACAGGTCAGAGGAGAAACTCTTCCTCGTCCGCTTCTTCGACAACAAGCGCAACTGGCAATGGCTTCCTAAGACCAAAATGGTACCATTCGGGGTTGACAAGACATTAGATAAAATCAAAATGTTGGAGGCTCGCACCTCAAGCACACGGAAAGCTGTGCAAAGCGCCTTCACCCGTGCCATGAAACACTTGAGCTTAGTCCAGGATTTCAGCAATGGTGTCTGAACTTCACTGAATGGCCACTTCAGGGTTTGTCATCCCCGGACTTGCCCACTATCACACCTACATCTTTGGCTGGCCATGTTTACGGGGAGCCTAAACGGGCTCCTTCTCTCTGGCCTTCCATCAGGAGCAGAATGAGCTTCTTTAAGGATGACTGTGAGAGGATCTTCACTAATGTGCTGTAGCACTGCTGTGAATACTTACTGCCATCACCATCCTTCAGAAAAGCCACGTAGCCAACCTTGCCTGTAAATACAAGATCGCTGTAAGTTATCCAACACTAATTTATTATGCTTCAGTTGGTACCGCACATTACCTCGTGGAAAATTTGTACTCCAAGGTGAACAGAGCACTGAGGTGCAGACCCTGTTGGTGCTACATTATAAGCAAAGCCTCaagtttttttcctcctgtctaAGGACATGAATGAGGCTTTTGCACTTACTGTATCAAACTAAATTCCTTTTTAGCAGTTAAGTTATTGTAAGTTACCAATGCAAGCTTCTCCTATTGGCATTAATGTTATCCActtttttatataatgaatgaaaaaaaatattcttacaACTACGTGCTGtttgtacatatttatataaagctaTGAAattctatactgtatatgtaatacACAGAGTCATTTTtggacaaagaaaaaagtagcgATGAAAAACCAGAAGTGCATCACTcatacaaaaccaaaaaaatgctgcccagttttctttatttttatttttaatttacatgagTGGCTGTAAAATGTgagggtgtgtctgtgtgtactgtataaaaGATAGTTGAGAGATTTTCCAACTTGCATATTTTTTCACTGTATTGGGACTTGTGCTAGATTTAAGAGAATGTGCCTGTACAAATGACTTGTATTAGAACAAAAAGGTATGCAAAACTTTATAGCCAAGAGTGCGTTGAGACAGTTTGGTGAAAGCTgtggtttctcttttttttttttttagcgtgtgtggtttttttgtttatttgtttgttttttatcatAACCATCTGTTGTGTCAGTTgaactttgtctttttttttttgtttgttcataaaGGTTTTGGGTAGCAAGAGAAATTTTCTTATggatttcttattttatatgaCTGTCACATACTTATTGTGAGTGGTGTTCTGTATTCTTTTCTCTGGGAGGATCACATCATAGTCAATGGTAGTGAATGCTGGCAAGCtccagtattttttattttaaatacactgaaaataaaaaaaaaaaaaatagaaggagCAAGGCCTCATTTTTGTATGAGAAGTCCAACCTTGTAGATTTTCCTGCTTAGGAATCATTAGGAGGGGACAAATAGATTGTCATAATTTTATACATGGATGGACTCTGGAATAGGGTTCATGTAGGAACACACACAATCCCCACGTGCAATAACACTCAGCAGCCACTAAATTAGGTATAGCTAATCAATAACAGACTGCCATACCTTTTACAAACAATGATAAGTCATTATTCACGATTGGTGCCGTCTTTTACTTCGAACTCAGGTGACTGTAGCGGAGACTTGTTCTCAAAATCTTTTTTCAAGGGGTGCATGTTAGCaggatatttttaatatttgtttaccagtacaataatttaatgtgatcatttacatatacagtatagctaAACCTTAAACTGAGTTACTATCAGTCAGCATGATCAGCTGTTTAGATGTCGCAGTGCAAGTGTtggttttatagaaaaaaatatttttatcttcAGTGACCTGTTATGCTACACTTTGTTATCTATGCTACCTCCTCATTCATGCTATGAGAAACACTGCACTTCTTAAATGagtctttttttctcacacacaaaaaaatccctAAGAAGTATATATATGCTTATGGAGTTTATATagctcactggccactttacaGGAATGCCTGTACACTTGCTTATTCCTGCAGGTATGCAATCAGCCAAACGTGCGGCAGCACAATTCATGAAATTCAGATGCAAgtgaagagcttcaggtaatgttcacatcaaacatcagtacAGGGGAAAATGGGATCTCGGtgagaaagcacaacacatgaAACCTACAGGTGGGTGAGCTACAACAGCTGAAATTCACATCAGGGTcccctcctgtcagccaagaacaagaatctgtgGCTACaatggtctttttccagtgaATGAGCacatgtacaggtgttcctattaaagtagcCAGTGGGTATGTATGTGATGGCATGCTCTGTCAGGTTTCATTACTtactttttaaacacaaacaatagGGGCATTAAACGTAAAGTATATCTGTTACTgaaatttatttgcattatcTGTACTGTGAATCTTAAATTAATCTGTAAGACTATTTCACATATAAATCTCTATCCAGGGCTCAACAAATATCTTTCAATGGCAACCATGTGGGACAAACACGATGTAACAAAATGATAAACTGCAATCACAGCGACATTTCTATCTTGGTGGGATTAAGGGTGTCAGGAGAACTGTTTTCAGCTTTCAGGATGTTGTTGTCTTCCTTCTACCACCATCATAAAGCACCATCGTATTCAGGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178775 lncRNA upstream 47696 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA upstream 47696 18425317 ~ 18444052 (+) True G150932
TU178777 lncRNA upstream 67528 18423558 ~ 18424220 (+) True G150933
TU178734 lncRNA upstream 124640 18366882 ~ 18367108 (+) True G150900
TU178695 lncRNA upstream 146019 18342243 ~ 18345729 (+) True G150873
TU178797 lncRNA downstream 26264 18530139 ~ 18530708 (+) True G150952
TU178799 lncRNA downstream 33386 18537261 ~ 18537855 (+) True G150954
TU178803 lncRNA downstream 48018 18551893 ~ 18552137 (+) True G150958
XR_004578835.1 lncRNA downstream 97664 18601539 ~ 18620821 (+) True LOC113530068
XR_004578836.1 lncRNA downstream 97693 18601568 ~ 18620820 (+) False LOC113530068
XM_026919197.2 mRNA upstream 817 18487484 ~ 18490931 (+) True pim3
XM_026920066.2 mRNA upstream 116384 18368046 ~ 18375364 (+) True pkmb
XM_026919595.2 mRNA upstream 174023 18306241 ~ 18317725 (+) False LOC113529962
XM_034307441.1 mRNA downstream 64738 18568613 ~ 18577366 (+) False prr5l
XM_026919460.2 mRNA downstream 64738 18568613 ~ 18577365 (+) True prr5l
XM_034307440.1 mRNA downstream 65211 18569086 ~ 18577365 (+) False prr5l
XM_026919459.2 mRNA downstream 75236 18579111 ~ 18586692 (+) True api5
XM_034307277.1 mRNA downstream 118313 18622188 ~ 18634768 (+) True hsd17b12a
TU178368 other upstream 649213 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 649213 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 649213 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2450501 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2672175 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 171135 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 217720 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 572720 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 617289 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 756749 19260624 ~ 19263893 (+) True G151401

Expression Profile