RNA id: XM_026919197.2


Basic Information

Item Value
RNA id XM_026919197.2
length 1959
RNA type mRNA
GC content 0.44
exon number 6
gene id pim3
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18487484 ~ 18490931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcacgcgcacacgcacacacgcgcacacacacgcgcacgctcGTGCCGACTGTTGCAGTGGAGTGGAGTGCAGTGTTCAGACACACGAGCGTTAGTCGGTGCTGTTAGTATGGCTGGAGAGGGACGTTATTGTGAATAGGGCTAATTGGCGAGCTTTCAGACAGTAAGGTGTTGAAACACCCTGCTGCATCTGATACTTGTGGTATTTTTAGGCTTACATTCTACATTCTTACGTTCTACATGTGATTTTGTTTAGGCTacacagaattttatttatcttcGTGAATTTTGGAGATTTGTTGATTTCCAAATCTCTTCAAAGATGCTGCTTTCCAAATTTGGATCTTTTTCTCACATTTGCGCCACGACTAACATTGAGCACTTGCCAGTGAAAATTCAGCTCCAGTCAGCTAAAGTGGAGAAGGAGCCGTTTGATAAGGTGTACCATGTGGGCTCGGTGCTGGGAAGCGGCGGGTTCGGGACTGTGTACGCCGCGAGCCGCATCTCAGACGGTTTACCGGTCGCTGTTAAACACGTGGCCAGGGAAAGAATTACTGAATGGGGCACAATTAACGGTTCGCTGGTTCCGCTGGAGATTCTCCTGATGAAGAAAGTGGGAAATACATTTCAGGGTGTGATTAAACTGCTCGACTGGTACGAGAGGCCTGACGGGTTTCTGATCATCATGGAGCGGCCGGAGATGGTGAAGGACTTATTTGACTACATCACTGAGAAGGGCGCACTGGATGAGGACACGGCCAGGGGCTTTTTCCGCCAGGTCCTGGAGGCTGTGCGACACTGCTACAGCTGCGGAGTAATCCACAGGGACATTAAAGACGAAAACCTGCTGGTCGATTTACGCACAGGAGATCTTAAACTCATCGACTTTGGCTCAGGAGCCATTCTCAAGGATACTGTGTACACTGACTTCGATGgtaCAAGAGTCTACAGCCCACCAGAATGGATTCGCTACCACAGGTACCATGGACGCTCTGCAACGGTGTGGTCACTTGGTGTGCTGCTGTATGATCTGGTTTGTGGAGACATCCCATTTGAGCATGATGATGAGATTTTGAAAGGTCATCTCTTCTTCAGAAGGACAATCTCCCCTGAGTGTCAACAACTCGTCAAGTGGTGTCTCTGCTTGAGACCATCGGACAGACCTACATTGGAACAAATATTCGAGCATGAGTGGATGCATACAGAGAAAGACTCAAAACCTCTGACCAGGGATATCACTCTTCATGCAATCTGCACAGACTCCTCATCCAGCACAAGCTCAAGCAAAGAAAGCCTCTGACAGCAACGGATATACTAACTCATTTATGACCCAAAATTGtttggacttgtctttaaattactttaaattatttttcagtctttttttgtttcaaatgaatatttttttaacactcaTGGGAAGTGCAAATGCAGTGATGCTAGCAACCCTATGGCCATACTCTTTGCTCTTATAGAGCTTATTCTTTAAATTTAGTTTTAACTGTTACTAGTGCCTTTTTCTTCCCTAGAAAGCTGCTTGGTGGGAcagtaaaaactttttttttttttgctccctcGCCCCCTTGTGGTGGactatattctctctctccacccccTTCTCACATGCATTATATACAGATAAACCCTTTTACTACTCCACTACTCCATCTCAGCTGTTGCCACATATTGGCTTTTGGATGGTAGATACTTTAGTGAATTGCACAATCAATGCAATATTAATAGATTTTAAGTTTGAAtacaagtatttatttatattcactcccatgtgttatttattaatacaaagCAAACATTCCACATTCTgtggctatttatttatttattcattttataccatCAGCAAAAAGGAAATAATGCTAGATTTGATACCCTTGCCTTATCCTGTAGTTGAATCTAAATACCTGCAAATAAACTATGCCTGTCTTATACTGATACACA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178775 lncRNA upstream 43432 18425317 ~ 18444052 (+) False G150932
TU178776 lncRNA upstream 43432 18425317 ~ 18444052 (+) True G150932
TU178777 lncRNA upstream 63264 18423558 ~ 18424220 (+) True G150933
TU178734 lncRNA upstream 120376 18366882 ~ 18367108 (+) True G150900
TU178695 lncRNA upstream 141755 18342243 ~ 18345729 (+) True G150873
TU178797 lncRNA downstream 39208 18530139 ~ 18530708 (+) True G150952
TU178799 lncRNA downstream 46330 18537261 ~ 18537855 (+) True G150954
TU178803 lncRNA downstream 60962 18551893 ~ 18552137 (+) True G150958
XR_004578835.1 lncRNA downstream 110608 18601539 ~ 18620821 (+) True LOC113530068
XR_004578836.1 lncRNA downstream 110637 18601568 ~ 18620820 (+) False LOC113530068
XM_026920066.2 mRNA upstream 112120 18368046 ~ 18375364 (+) True pkmb
XM_026919594.2 mRNA upstream 169759 18306241 ~ 18317725 (+) True LOC113529962
XM_026919196.2 mRNA downstream 814 18491745 ~ 18503991 (+) True brd1b
XM_026919195.2 mRNA downstream 817 18491748 ~ 18503875 (+) False brd1b
XM_034307441.1 mRNA downstream 77682 18568613 ~ 18577366 (+) False prr5l
XM_026919460.2 mRNA downstream 77682 18568613 ~ 18577365 (+) True prr5l
XM_034307440.1 mRNA downstream 78155 18569086 ~ 18577365 (+) False prr5l
TU178368 other upstream 644949 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 644949 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 644949 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2446237 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2667911 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 184079 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 230664 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 585664 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 630233 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 769693 19260624 ~ 19263893 (+) True G151401

Expression Profile