RNA id: XM_026919209.2


Basic Information

Item Value
RNA id XM_026919209.2
length 4554
RNA type mRNA
GC content 0.43
exon number 24
gene id aass
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18089100 ~ 18111444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGCTCAGACTCGGGATTGGTGGGACGTAGGAGGCAAGTCAAGTGCTATTTCGGACAGAACCAGGGCTTGAATCACTTAACAGTCAGAAGCGTTTCCAGTGTAGAAACAGTCCGCTCAGAGCTGATCTTATTACACTGCAGCAATCCGTGTTGACTGGCAGTCATAACTTTTCCGTGAAGCCTGCGTGAGCCATGCTGCGACTTGTTAGAGGCCAGAGCAGGAGGGTGAAAGGCTGTGTGCGCAGCCAGCGGAGGTCGAGTCATCATAAGAGCGTGATGGCAATCCGAAGAGAGGACGTTAATGTATGGGAGAGACGGGCACCCCTTGCCCCGCAACATGTGAAGGAAATCACTGCAGCAGGCCACAAAGTGCTGGTGCAGCCCTCCAATAGAAGAGCCATCCACAACAGATTCTATGAGAAAGCAGGAGCCATTATACAGGAGGACATCTCAGAGGCTTCTCTCATCATTGGTGTGAAGAGGCCACCAGAAGAAAAAGTCATTCCACAAAAAACCTACGCTTTCTTTTCCCACACCATCAAAGCCCAGGAGGCTAACATGGGTCTTCTAGATGATATACTCAAAAAGGAAGTGCGGCTGCTTGATTATGAGAAAATGGTTGACGAAAATGGGTTCAGAATTGTTGCATTTGGAAAGTGGGCTGGTGTTGCTGGaatgattaacattttgcaTGGGCTAGGTCTCCGATTCCTGGCCCTTGGGCACCACACTCCCTTTATGCATATTGGAATGGCACACAATTACAGGAACGTCAGTCAAGCCATACAAGCAGTGAGGGATTGTGGGTATGAGATCTCACTGGGCCTCATGCCTAAGTCCATTGGTCCACTCACATTTGTGTTCACTGGTACAGGCAATGTATCTAAGGGTGCACAAGACATTTTCAATGAGCTTCCATGTGAATATGTGGAGCCACATGAACTGAAAGAGGTCTCCAAATCAGGAGACCTGACAAAAGTTTATGGTACAGTGATCAGCAGACACCACCATTTAATTCGAAAGAGTGATGGGGTTTATGATCCTTTTGAGTATGAGCACCATCCTGAGCGTTACACCTCTCACTTCAGATCCACTGTAGCACCTTACACAACCTGTCTGATAAACGGCATCTACTGGGACCCACACACTCCAAGGCTGCTGCGGCGACTGGATGCACAGAAGCTTATGAGACCTTCAAAATCTTTAGCCGCAATGACAGAAGGCTGGCCCTCCCTGCCACACAAGTTCTTGGCGATCTGTGACATTTCTGCAGATACAGGTGGTTCCATTGAGTTCATGACAGAGTGCACCACCATTGAGAAGCCCTTTTGCATGTATGACGCCAACCAGCACATAGACCACGACAGTGTGGAAGGAAATGGCATTCTCATGTGCTCTATTGATAACTTGCCAGCCCAGCTTCCCATTGAGGCTACTGAGTATTTTGGCAATCGCTTGTTCCCCTACATTTGGGAAATGCTTCAGTCAGATGCGACAAGACCACTGGATGAAGAGAACTTCTCTCCACAAGTCAGAGATGCTGTAATAACATCTAACGGGAAGTTGACTACTAAGTTTGAGTACATTCAGAAGTTAAGAGAGAAAAGGGAATCAGAACAGATCCTGAAGAAAAGCGGAATGAAGCGTGTCTTGCTGCTAGGCTCTGGCTATGTGTCCTGCCCAGTTGTTGAGTATCTCACCAGGGATCCTGGCACCCAAGTCACAGTGGCATCAGTGCTTCTAAGTCAGGCTGAGGAACTGGCTGCCAAATATCCAAACACCATACCTGTGAGGCTTGATGTGACTAGCCAAGAGGGCCATTTCGAGTCCCTGGTCAAGGATCATGACCTGGTCATCAGCATGCTGCCATATAATTATCATCCTTTGGTAGCTAAATATTGCATCAGTAAGAAGGTGAATCTAGTGACAGCCAGCTACCAGTCTTCAGCCATGAAAGAGCTCCAGAAGTGTGCTGAGGAGGCTGGCATCACCATAGTCAATGAGATGGGCCTGGACCCTGGCATTGATCACATGTTGGCCATGGAGTGCATCGACCAGGCCAAGGCAGACGGTTGCACTGTGGAATCCTACAGCTCTTTCTGCGGTGGTCTTCCCACCCCAGAGTGTTCTGACAATCCACTGCGTTACAAATTCAGTTGGAGTCCATATGGAGTGTTGCTCAATACCATCAGTCCTGCCACTTATCGCAAAAACAACCAGgtGATCAGTATTTCCCCTGGTGGGTCTCTAATGGATGCCACCGTGCCCATGGACTTCTTGCCAGGTTTTAACCTTGAGGGCTTTCCCAATCGAGACAGCACCAAATATGCTGAAGCCTATGGCATTgagtctgcacacacactgatcagagGGACTCTACGCTTTAAGGGCTTCTCCAGAGCAATGAGCAGCTTTGTAAAACTAGGCCTGATCAACACTGAGCCTTGCCCAATGTTGGAACACACAGCCGATCCTGTCTCCTGGAAAGAGCTCCTGTGTAAGCAGATTGGCCTGACCTCTGATGTTAGCACTGAGTCTTTTGAGGAAGCTGTGTTCAATCAAATTGGAAGAGATGAGTTCAGGATGCAGACTCTCAAATGGTTTGGGATGCTGAGTGAGGAGCCTGTGCCTCATGCTAACACCATCCTGGAAGCACTTGCTAAACACCTGGAGGCTAAGCTGTCTTTCGataaaggagagagagatatgatCATCATGAAGAATAAGATTGGCATCAGACATCCTACAGGAGAACTTGAGATGAAGCACATCAGTCTGGTGGTCTATGGAGATGCTAATGGCTTTTCTGCCATGGCCAAAACAGTGGGCTACCCTGCTGCTATTGCAGCTCGTATGGTCCTGGATGGTGAGCTGAACACTAAAGGACTTGTTGTACCAATAACGAAGAATATCTATGCACCTGTTTTGAGGAGACTTCAGCAGGAAGGCATTCAGTTCACCACCAAAAGCACAATATCAGAGTAATGTTCTGTAAAATCTACTCACGCTGCTGATAAATGGATGATTATCTATTTTCTTAATCAACTGCTTTTCACTTTTGTCTGATGAACTACTGAATGCTTTGGAATGTTTGCTTCCTCCTGTAAAATTACTTTATATTGTAACGGTTTTATTTAGATATTCCAGCTTGTAGGTCAGTACATATCCCTCTACAACCCTTAAAGCACCTGTGCATCAAGCAGTGAGAAGGGCATGATGCTTTACTATGATGTAttcaacacatttatttcaaccaagaaaaaaactgaactgaactaaaCTAAACTGCACATTTTTTGTCAAACAGACGAATTTGTTTTCTAGTACGTATTTCAGatgggttcccaaactaggggagAAACTCActatttcctctttttgtttaaatatcGAAGGCAGATTTTgtgtgctgttgtttttaaaatgttacttgGAGTCACCTTCAGACAAGCCACATTTCAAGTAATAGGGTATTTGCTATTTTAGGCTTTTTCACTATcctaacacactgcagtagcaataagaaaaaaaatggaagaatttCACCATCCATCTACCTctgctaaacaaactagcatacTTGTGCACTATTCTCAACCGTTATTGAGTTCTAACACTAACCGTTTTTCTaacattacagttagtgtttgaattttaaaaacctctcaaaCCTCTTCAGACTTACAGAaatgtctgttttgtgtaccagtcttctggattttctagattagtaaatacttttgaatgtaagatCAGAGTAGTCGATTTGCGACACAGCCCATGACAGCAGTCATTACTACGGCGTGCagttttaaaggtgcattaggtaagatttctCAAAATTTGTCAAGAGTAGGTCTCTGATTTGCAGGAGTCCTATATTGTAAATCTGGAGTTTTACAAATGTAGGTGAAGGTTTGGGGTAGCAGAAAATTCATGATGTCCATTTGAGTTCATTTACCCATACAGTTTGGGAACCCTTGATATATTTTCTAGTTTCTTTCTGGAATTTTTGTTCTAGTATTTCAGTTACTGTCAATAAATTTCATGTTAATAAACTTCGAATTTCATAGCTAGAAATGTGACTGAAGGGAGGTTCAGTGCTCTTTGTTTAGTTTCTGAATGccatcattaatttatttaaagcagCATGTCAGTAGCTCCAGTCACAGCACTCATCAATACAGAACTGACACTTCTCACCTGTATGATATCAAAACTGATGAGTTGTTCCTCATGAACCCCAATTCATAATTTGATCATATTTGTTACAAATTGTATATATCTCtaatctgtgtaaaaaaaataaataaataaaaataaaaaataaataaattaaaaaaagtccaTCAATATGTACTTTtatgaaacaataaataaatggcagAAAAAATAATTGCTAAACAAACCCAATGAGATATTTTGGCAGTGATACTGTAGAAAGCTTGTCATAATATGATAAAGGTCAGATTTTTGCAAATCCATTGAACTTTTGGATATTTGCAAACCATGGAAGCCAATCACTATtcaaataaactgattttaacaGATTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K14157 AASS; alpha-aminoadipic semialdehyde synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178394 lncRNA upstream 173858 17914625 ~ 17915242 (+) True G150609
TU178374 lncRNA upstream 176517 17911637 ~ 17912583 (+) True G150592
TU178372 lncRNA upstream 248651 17832766 ~ 17840449 (+) True G150590
TU178163 lncRNA upstream 386342 17702554 ~ 17702758 (+) True G150407
TU178012 lncRNA upstream 631965 17456920 ~ 17457135 (+) True G150268
XR_004578772.1 lncRNA downstream 19402 18130846 ~ 18139145 (+) True LOC117598020
TU178595 lncRNA downstream 71111 18182555 ~ 18184010 (+) True tmem17
TU178695 lncRNA downstream 230799 18342243 ~ 18345729 (+) True G150873
TU178734 lncRNA downstream 255438 18366882 ~ 18367108 (+) True G150900
TU178777 lncRNA downstream 312114 18423558 ~ 18424220 (+) True G150933
XM_026919753.2 mRNA upstream 2365 18082942 ~ 18086735 (+) True fezf1
XM_026919048.2 mRNA upstream 9478 17949292 ~ 18079622 (+) False cadps2
XM_026919805.2 mRNA downstream 60487 18171931 ~ 18180647 (+) True slc15a5
XM_026920019.2 mRNA downstream 71110 18182554 ~ 18184033 (+) False tmem17
XM_034307649.1 mRNA downstream 71110 18182554 ~ 18184033 (+) False tmem17
XM_026918631.2 mRNA downstream 102679 18214123 ~ 18227661 (+) False cnot2
XM_026918633.2 mRNA downstream 102679 18214123 ~ 18227661 (+) False cnot2
TU178368 other upstream 246565 17834237 ~ 17842535 (+) True G150589
TU178369 other upstream 246565 17834237 ~ 17842535 (+) False G150589
TU178370 other upstream 246565 17834237 ~ 17842535 (+) False G150589
trnav-aac_18 other upstream 2047853 16041175 ~ 16041247 (+) True trnav-aac_18
XR_003403067.2 other upstream 2269527 15807990 ~ 15819573 (+) False LOC113529564
XR_004578809.1 other downstream 563566 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 610151 18721595 ~ 18724686 (+) True urahb
XR_004578793.1 other downstream 965151 19076595 ~ 19077868 (+) True LOC117598072
TU179056 other downstream 1009720 19121164 ~ 19125132 (+) False faap24
TU179313 other downstream 1149180 19260624 ~ 19263893 (+) True G151401

Expression Profile