RNA id: XM_026919243.2


Basic Information

Item Value
RNA id XM_026919243.2
length 3140
RNA type mRNA
GC content 0.44
exon number 10
gene id gabrb2a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7467772 ~ 7525350 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCAAGGCTACTCTTTGATCTTGAGGCTCGGTGTGCGCATGCGCGTGAGTCGCGCTCGGCTTTACTGCACTGGCTGGGACTGAAGTTGGATGCGCGGCGCGCGCTGTCTTCCTTCAGCTTGGTccacaagaagaaaaaaaatcatcaaaactGTTGCAATGGAGAGGATGAGGAAATCGCAGTGCATCTTCTTGCTGTGTCCCTTCATCATGACTGCTGTGTGCGCgcaaagCAGAGACTCTAGCAATATGCCTGTAGTGAAAGACACAGTGGACAGACTGATGAAGGGATACGATATCCGACTGAGGCCGGATTTTGGAGGGGCTCCGGTGGCGGTTGGCATGAATATAGACATTGCCAGCATAGACATGGTGTCCGAAGTAAACATGgACTACACCCTGACCATGTATTTCCAGCAGGCATGGCGGGACAAGCGTCTCTCGTACTCAGAGATCCCACTGAACCTGACGCTGGACAACCGCGTGGCCGATCAGCTGTGGGTGCCTGACACTTACTTCCTCAATGACAAGAAGTCCTTCGTGCATGGCGTCACGGTGAAGAACCGCATGATTCGCCTGCATCCTGATGGCACCGTGCTGTATGGATTGAGGATCACCACCACAGCAGCATGTATGATGGACCTGAGACGCTACCCGCTGGATGAGCAGAACTGCACACTGGAGATTGAGAGCTATGGATACACCACAGATGATATTGAGTTTTACTggagaggaggagatggagcTGTGTCTGGAGTGGAGCGCATTGAGCTGCCCCAGTTCTCCATCGTGGACTACAAGCTCATCTCGAAGAATGTAGTGTTCTCCACAGGTTCATACCCACGTCTATCGCTGAGCTTCAAGCTGAAGAGGAACATTGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATTCTGTCTTGGGTCTCATTCTGGATCAACTACGATGCCTCTGCTGCCCGTGTAGCCCTAGGTATCACCACGGTGCTGACCATGACCACCATTAACACCCATCTGAGAGAGACTCTTCCCAAGATCCCCTATGTGAAAGCTATAGATATGTACCTGATGGGCTGCTTCGTCTTTGTGTTCCTGGCCCTGCTCGAGTACGCCTTCGTCAACTACATCTTCTTTGGTCAAGGCCCCCAGAGGCAGAAGAAGGCAGCTGAGAAAGCAGCCACCGCCAACAACGAGAAACTCCGACCTGATCCGAACAAGTGGATGGTGGGAAATGTAGTTCAGAGAGACGATGCTCTGTATGCCAGAATGAAACAGAGGGAAATTGACGTGTATGACTCGATGTGGGATCCAATCTTTGCCGACGATGCTGCATTAGGACTAGGCGAGCAGAGACTTAAGATGAATCCGGATGATATCCGGCTGACCACAGTGGAGATGAAGAATGAGATGGGTCCTGGCGATCTCTCCCGTGGTCTGGGCGACCCGCGAGGTGCCATGCTGGCGTATGACAGCTCCACGCTGCAGTATCGACGGGCAGCACTGGCACGCCACAACTACGGCACCGGTGctctggagaagaagaagagccgTCTACGCCGACGTGCTTCGCAGCTCAAGGTCAACATCCCTGACCTGTCTGACGTCAACTCCATCGACAAGTGGTCCAGGATGGTCTTCCCAACCGTCTTCTCATTCTTTAATGTGGTCTACTGGCTCTACTATGTCCATTAAGAAGGGCCCGGGAGAGAATAaagtacaaaaacattcaaaagataaaatatataaaacactgagtCCCTTTTATTTCTcgaaaaatagattttatggaGGCAAAGGAGTCAGGATTGgctctttttttgttctgaGAACACCATAATGACTGACAAAGACACTAAACACAACCAGACTGAAAGTTGCAGAATTTTAATAGATCACGTATATTGTCATTCGTAACTTACTCTGTGGACAAATATTTATGCTTGCgtttgcatatattttaaagtttttttttgttgttgttttgtttttttgctgattATATCTATTTACTTTGTAGCCAATGCTATGTGTGTCCAGGAAAGTTTTAGAGATGATTTTTTTCAAGGGCTCATCCTTCAAagccctttttttcccctatagtTAAACTGTTAGACATCTTTTAAAAGCAtgctttggtttggttttttgtCTACATCTCTTGCTGTGAGATGAAGCacaatgcattttcattttgaatagCTAAAGATCCTTctattctacaaaaaaaaacatttgatttgGTGCAATGCAGAGCACTGAGTCTCTAAAAGGAAAACAGGGTAAACACACACCAGGTAACTTCATCATAATGTTGGCATTGTTATCGGCGCAGATGTGAATGGGGCAATAGGGGGCGCTCTTTCCTATCAACCCAACAGACTTTCTTCGCCCCTCCTATGGTGGGGACTTTTGAAGGTGATTGAATGAGATTTGGGCAAACATCAGTTGTGTGGATTGTTTGAACCCCGTGGCTGGACATAATGAAGATTCTCTTCATCCTCTTAATTCGACAAACTTTTGTCTGGCTTTGTTCCAGATCCAAGTCAtcaaaaacatcacacactctttatctCTACTCACACGTGAGTGGGACATTATGGCTGACTGACATCTCTCCGACATGATATAATGAAAAAGGTGAGTTCCATAAAAGATATAATTATAATCCATTAACATTACCAATAGATTTAAGTTAAAAAAGAGCTTATAGATGATattaaatcatgttaaaaagaattttataaTTCATAGTTATAATATTAGGTGTTAATGTTACAAATCATTATTTAAGCAGGTATATTTTGGTGTATTAGCTTTCTTATTATAAAAGATCTCTACTGGGATGCGGAGAAAAATTAtctaaaggaagaaaaaagactgAACTTTCTCAAGGCCTGCACATGTGAAAAGGATGGTATGGACAGAACAGAGCGTGAATGAAATATTGTTTTGAAGTCAACTTTTCAGAACAGGGAAGTATCTGGAAAGATCAATCAAGGCATCTGTAAGGTGATTTTGTATCAAATCCTGTACATTATAATGATATTTCATAATgatctgtaaatatatattgtgtaatgACTGTCAAGAATAACAATATGTatctaaattaaattattaaagctGAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171231 lncRNA upstream 19241 7447870 ~ 7448531 (+) False gabra6a
TU171170 lncRNA upstream 46952 7418761 ~ 7420820 (+) True G144523
TU171130 lncRNA upstream 200857 7239003 ~ 7266915 (+) True G144486
XR_003403117.2 lncRNA upstream 328400 7132850 ~ 7139372 (+) True LOC113530161
TU171240 lncRNA downstream 49758 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 50710 7576060 ~ 7576788 (+) True G144661
TU171371 lncRNA downstream 52778 7578128 ~ 7578377 (+) True G144665
TU171439 lncRNA downstream 160398 7685748 ~ 7688153 (+) True G144715
TU171450 lncRNA downstream 178731 7704081 ~ 7704763 (+) True G144726
XM_026919624.2 mRNA upstream 1220 7447880 ~ 7466552 (+) True gabra6a
XM_026920013.2 mRNA upstream 23506 7439695 ~ 7444266 (+) True ccng1
XM_026918713.2 mRNA upstream 33542 7422869 ~ 7434230 (+) True LOC113529491
XM_026918647.2 mRNA upstream 49244 7401497 ~ 7418528 (+) True sfxn1
XM_026918781.2 mRNA upstream 67347 7382078 ~ 7400425 (+) True LOC113529540
XM_034307125.1 mRNA downstream 10985 7536335 ~ 7574229 (+) False atp10b
XM_026918736.2 mRNA downstream 12124 7537474 ~ 7574229 (+) True atp10b
XM_026919168.2 mRNA downstream 120978 7646328 ~ 7672282 (+) False atp7a
XM_026919167.2 mRNA downstream 120994 7646344 ~ 7672282 (+) True atp7a
XM_026918884.2 mRNA downstream 149191 7674541 ~ 7678733 (+) True sowahab
trnag-ccc_3 other upstream 242224 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaw-cca_12 other upstream 511256 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 514899 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 516629 6951072 ~ 6951143 (+) False trnaw-cca_10
LOC117598150 other upstream 559196 6907189 ~ 6908576 (+) True LOC117598150
trnaa-agc_3 other downstream 83691 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 86420 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 89155 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 94587 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_7 other downstream 109148 7634498 ~ 7634570 (+) True trnaa-agc_7

Expression Profile