RNA id: XM_026919315.2


Basic Information

Item Value
RNA id XM_026919315.2
length 2623
RNA type mRNA
GC content 0.48
exon number 21
gene id pot1
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17760318 ~ 17803798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCGCGTGACGTTTCATTTCCGCCTCCTTTCGCGCACACATTAAACTGCAGGAGGAGACTTTCCTTCAGTGCAGCCTGCTAATGTTGTGTTTACATACCTGTCCAGGGGCAACTTCACTAATCCTGCATCCAGCTTTATCCCCTTCACCAGTGAtaaATAATAAGAGCGATGCCTGTCCACACAGTGAAATGTGCTTCAGATCTGGACACTAGTGTCCCTCCACACTTCCAGCGGATTTCCATATCAAACCTCAAACTCACATCTGACTGTGTGCACAGGAGTGTAAAGGGTGAAGTGGTTCAGAAGGGCCCTGTAGTGTcttgcagacagacagaccaccTGCTAAAGGCTGTTATCCAAGataaagacacacagagttcagacacatcacaacaaacatcaatcaatgtcattttttttggtaCGTTGGCGAAGGACTTTTCGCAGACTGTCAGTCAAGGGGACATTGTCTTATTGTCTGGCTTCACAATCAGCAAGTCACCCACTGAACAGACTGACAGACTGCATCCGTGTCTTTTGGAGATGAGTAGCATTGatgcctgtgtgtatGCGTACTCATCTAAACTTTTTGTCTCCAGTGGGCCTGCTGCTGCCAGCTCAGAGtcCAGGTACACGTATGTCCCTTTAAATGAACTGAAACCCAACAGAATAGTGAATGTGTATGGTGTGGTGACCTTCTTCAAACAGCCTTTTCCCACCAAAGGCACAGATTACTGCTCCACACTGAAGATCATAGACCAGTCAAATGCTAAAGTGAGCTGCACCATTTTCAGTGAAAGGCTCGAGGACCATCCTAAAATCTTCCGAATCGGAGACATCATTCGTCTTCACAGAGTGAAGGCTCAAATGTTCAACGGATCCATGACTCTACTGACTACTTTAGGCTGGTCTACCATCACATTTGATGGGACGATTGACAGCCCTATTGAGCCCCGAACATCAAGTAGGACATTCCACTTTGGCGAAGATGATAATCGTGCAGTGGAGGCGCTACGTCAATGGGCAGCAAGCCAATTTCTGGCCACTGAGCCCACTGTTCCCCTGTCATCAGTACAGCCCAGGATGTTTTTTGATCTGACCTGCCAGCTGCTAGCCAAAGCCAGCATGGACACCAGATGCATGCTGCTTAAGGTCTGGGATGGGACAAAATGTGCGCACCCACTGCTCAATGTGGCCGTGGCACCAGATGCCTTGGAGGGAGAATCCAGTCCCTCTCGAGATCGAGAGAACATGATTGCTAACATTCTGGTCTATGACAACCATGTGGAAGGAGCCAGTAAGTTGAagcctGGCATGTTTCTGCGCCTGTACAATCTCCATGCAGTGACTCAAAGCGCTCCTGAGCAATCTGCTGACTGTGCCAGCCCCCTCTGCTTCCACCTGCACGGCGGCACTTCGTACGGTAAAGGCCTGTGTGTGCTTCCCTCAGAGAGCCCCGAGCTCCAGCCGCTCAAGAGATTGATGGAGAGTCATGTAGCAGTAGCTGGTGAAAATGAAGTGAATGATGCCACTCTTCTAGATGTTTGGTATACTCCTCCAGAGGCTCTTGGTGAAGCGGTCAATGAAGATTTTTATACAGTTCGGACATGTGGACACGCACTGCAGCAGGTATCTCTTGCTCATGTGAAGAGATCAACTCCACCTGTGGTTTGTCACGTTCGTGCCAAGGTGAAATCTTACCAACCCCAGAACCTGTACCAGTGCCTCAAACTCTTCTGTCCACAATGTACAACACTAGTGGAGGTCCCCAATGATGAGGTTATAGCTCGGGTATTCCAGGAGGCTTTGAGAGTCAATCAGCCGTGCAGTGAGCACTGGGCAGTCACCTCTTCAGTGGACTCCATTAGCATGCACGTGTCCTGTGAGATGGtcctgagcaacacacacactcagctgctGTTTCTCCAGGGTGTTACACTggaagaaatgtgtgtgatatCCGCTGCTCATAGTAACGTGGTCCCTGTGCGCTCGGATGATGGGAGAATGAGACTGCTGGATTTCACAGCCCCATTCCTCTTCGGTAGAGACAAGAGATATTATGGgtgtAAACAGTGCTCTCGGTCCACATTTGTGGAGCCTGAAGTTTCTGGAGTAGAGATGTGGGATGAGCATAATGTGGCCAAAGCTCTTGGCGTGCAGCTGATGCGATATGCTTTACTGATCAAATTTGAGCTAGAGGATGAGACAGGCACACTTGAAGCTTTAATTTGGGAGGATGCTGAGAGATTCTTCCACGTCACTGCTGCTGACACATCAGCTTGTCAGGATTCGCAGGATAAAGTTCAGACCATCATGGATAGGCTTCATCCACCAGGGAGCAGCATGGAGCGCCCGTGGCTGGACCTCTGCCTTAGTGCCTACACTGTAGAGGAGAATGGCAGAACTCAAGTGTGCTACCAGATAACTAACACAGAAGCAAGAGGCAATTTCTGCACTCCCCAGTGAGGCCAACTTTCCTTTGGATGAAGAATGCTGTGATGCACCAACTACAGTAATGCACCTTTGGATTGAATGCACTTCAGTTAGAATTTTGACAAACTAACAGTGAGATtagctaatttttttattttatacaaaatggtgttttgtaaaaaaaa

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178163 lncRNA upstream 57593 17702554 ~ 17702758 (+) True G150407
TU178012 lncRNA upstream 303216 17456920 ~ 17457135 (+) True G150268
TU178009 lncRNA upstream 313891 17446249 ~ 17446460 (+) True G150265
TU178004 lncRNA upstream 325974 17430143 ~ 17434377 (+) True G150261
TU177846 lncRNA upstream 505014 17253667 ~ 17255337 (+) True G150152
TU178372 lncRNA downstream 28968 17832766 ~ 17840449 (+) True G150590
TU178374 lncRNA downstream 107839 17911637 ~ 17912583 (+) True G150592
TU178394 lncRNA downstream 110827 17914625 ~ 17915242 (+) True G150609
XR_004578772.1 lncRNA downstream 327048 18130846 ~ 18139145 (+) True LOC117598020
TU178595 lncRNA downstream 378757 18182555 ~ 18184010 (+) True tmem17
XM_026918621.2 mRNA upstream 37270 17597073 ~ 17723081 (+) True grm8b
XM_034307116.1 mRNA upstream 37270 17597073 ~ 17723081 (+) False grm8b
XM_026919711.2 mRNA upstream 165621 17576708 ~ 17594730 (+) False znf800a
XM_026919317.2 mRNA downstream 2327 17806125 ~ 17811964 (+) True gpr37a
XM_026919222.2 mRNA downstream 87089 17890887 ~ 17910861 (+) True wasla
XM_026919510.2 mRNA downstream 117757 17921555 ~ 17931146 (+) True iqub
XM_026919511.2 mRNA downstream 130492 17934290 ~ 17942955 (+) True slc13a1
XM_034307324.1 mRNA downstream 145493 17949291 ~ 18079622 (+) True cadps2
trnav-aac_18 other upstream 1719104 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1937760 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1940195 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1940778 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3939689 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 30439 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 30439 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 30439 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 871212 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 917797 18721595 ~ 18724686 (+) True urahb

Expression Profile