RNA id: XM_026919335.2


Basic Information

Item Value
RNA id XM_026919335.2
length 3115
RNA type mRNA
GC content 0.44
exon number 15
gene id clpxb
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15609440 ~ 15620419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACGAAGAAGAAACGTCAgactgtttattctgtttagtGATAGCGGAGAAAAACAAGCTTGGTCTAGTTACACCGAGCTGCTTCAGCGATTACATAACCCTGACCTCGTGCTGATGGAAACATCCGTTTAGTGAATACACTTTAAGCTTTTAAACACAGTCAAACCggcatgaaatattttataaactgcaCAGTTCATCCTTTATGATAGCGTTATTTTAGTTTAGCTTAGCGAGCCGCTGGACGGAAGCTGGCAGTGTCAGTAACCGGTTTGATGTGAACTCGGACACTCTGTTCCTTCCTCTTTTCTCCACATCTCGACTCAGAAGATGTCTTCCTGTGTATGTAGAGCTGCTGCGAGGCGACTCTTCAGTTCAgcacacacagGGTTTTCACGCTCACACATTAAGTTCTATGCTCTCAGTAGCAGAGTGATTCGTGAAGCCTGTCTACCTCCTGCAGTGCGAGTCAGATCGTTTTCAGAGAGTGCCGTGTTTTTAGCCTCAAAGGAGAACACACCAAAAGATGGCTCCAGTGATGGGGGAAAGGAGAGTGCAGCAGACAGAATTGGGAAGAGATCTACGGGTTCGGGCGGGTCAGGGAAAGGAGGACGTCAGCTACGTTGCCCCAGATGTggagacacatgcacacatgtgGAGAcgtttgtgtCATTCACACGttttgtgaaatgtgaaaaatgtcatcacTTCTTTGTGGTGCTTTCTGAAAGCGATTCTAAGATGGGTCTGAATAAGGAGGCAGAATCTGGTGCCGAAGCTGTTAAACTGGCATTTGCTCAGAAACCTCCCCCACCCCCTAAAAAGATCTATGCCTACCTCGATAACTATGTTGTTGGCCAGTCATATGCAAAGAAGGTGCTGTCGGTTGCAGTGTATAACCATTACAAACGGATCTACAACAACCTTCCTGCATCAGGCGGACAGCAAGCGGGGACAGAGAAGCAGATCTCTCTCACTCCCCAGGagcTAGAGATCAGAAGACGGGAAGATGAATACAGATTTACAAGGCTGCTTCAGATTACTGGGATCAGCCCACATGGCAATGCTCTTGGTGCATCTGTTCAACAACGGGCCACTCAACAAGCTACCCCGGAGAAAAGGGGTGCCGAGGTGCTGGACTCTACTCACACTAACATCAAACTGGAGAAGAGTAACATTGTGCTGCTAGGCCCTACTGGATCAGGTAAAACACTTTTAGCTCAGACTCTGGCTCGGTGTTTGGATGTTCCTTTTGCCATCTGTGACTGTACCACGCTGACCCAGGCAGGCTATGTAGGTGAGGATATCGAGTCGGTCATTGCGAAGCTGCTGCAAGATGCCAACTACTCAGTGGAGAAAGCCCAGCAAGGAATAGTGTTTCTGGATGAGGTGGATAAGATTGGAAGTGTTCCAGGAATTCACCAGCTCAGAGATGTAGGAGGAGAAGGCGTCCAGCAGGGTTTGTTGAAACTCCTGGAAGGCACCATTGTGAATGTTCCAGAAAAGAACAGCAGGAAGTTGCGAGGTGAAACTGTGCAGGTGGACACAACCAACATCCTGTTTGTGGCATCAGGAGCCTTCAACGGGCTGGACCGAATCATTAGCCGCAGGAAGAATGAGAAGTACCTTGGATTTGGCTCGCCCTCTAACCTGGGGAAGGGACGccgtgcagcagcagcagctgatcTGGACAATAGCACAGGCAGTGAGCTGGATGTGGCTGCTGAGATGGAGGAGAAGGATCAGCTGCTGAGACATGTAGAGGCACGTGACCTCATTGAGTTTGGCATGATTCCTGAGTTTGTAGGTCGTCTGCCCATCGTAGTGCCTTTGCACAGCCTGGATGAGCAAACACTAGTGCGCATTCTCACAGAGCCCCGGAACGCTGTGGTGCCTCAGTACCAGGCTCTCTTCAGCATGGATAAGTGTGAGCTGAATATAACCCCAGATGCACTCAGGGCCATTGCCAGACTGGCTCTTGAGAGGAAGACTGGAGCCAGAGGTCTCCGATCCATCATGGAGAAGCTACTGTTGGAGCCAATGTTTGAGGTGCCACAGTCAGATATTGTGTCTGTGGAGCTGAATAAGGATGTGATTTTGGGCAAGACTGAACCACGCTATATCAGAGCTTCAACTAAAGAGACCACAGAGGAGGAGTATGACTGTGGCATTGAAGAAGAGAACTGGCTGAGACAGGCAGAGGTAGCCAACAACTAATAATGCAGCTGTGAAACATCTAATAATACAGCTGTGAAAATCTCTCTGGATTCTGCGTCACTGAACTTGTGAAAACAAGAAGCAACATTCTAAAGAGGACCCCAGCTTAAACCTAAAACAGAGACACTTAACAAATATCAGCTGAACAAGGAATGTACAGAAAGTGACTACACACAGGCTTTAATTACAGTCTTTGTGGATAACTTAaaatttgctaacaattttaTGTATCTAAAAAGAATTAGATTTTCTTGAGTGAGTTTTTGTGAATGTGGAAAGATTGCCTTAACTGGGATGATAAAATGCAGTTTAAGGCATAAAGCTAGTTATGTTaaatttttagtatttttggtGCATACACCAACTTGTCCTTTATTTAGTAAGAGTATTTCAGCTGTGCATAATGGTGGTGCTGGTTTCtctacctctttttttttaacagtaatgaATGTGATGCTGCTCTGTACTTATAGGTTTATCTTTTTTAGACTACCTATAATTGAATCAGAGAAACTGCTCTAGAGgactgtgattttttaaaacaatgcacAAGCCATTGCAAGAACAGCACAAGTGACCTTTTTCAAATATGCTAAATGCCCTCTTATTAACCTGCTCTTCTTGgcagatgtactgtatgtttggTTTGTACAACACTGATAATTCATCAAATCTCAGTACTACTGATGGTTTCGAAATGCAGTCTGTctacacacacttgtgtgttgAATTGAGTTCACAACAGTAATGAAACATTTTGTACTCATAACAGTGACATTAACTTTTCATATATACTTTTATTGAAATTTTTCCATTTCAGATGTCAGCAAACCACCACAAAGGCCATTAAATTTGGAAtttatatgttgttatttaaaaaatataaatataatgtgta

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176640 lncRNA upstream 39953 15567836 ~ 15569487 (+) True G149131
TU176588 lncRNA upstream 125537 15483074 ~ 15483903 (+) True G149091
TU176586 lncRNA upstream 127412 15481687 ~ 15482028 (+) True G149089
TU176585 lncRNA upstream 127870 15481252 ~ 15481570 (+) True G149088
TU176517 lncRNA upstream 157536 15451576 ~ 15451904 (+) True G149027
TU176794 lncRNA downstream 90594 15711013 ~ 15711917 (+) True G149248
TU176798 lncRNA downstream 100929 15721348 ~ 15725091 (+) True svip
TU176815 lncRNA downstream 134246 15754665 ~ 15754912 (+) True G149268
TU176828 lncRNA downstream 151419 15771838 ~ 15818368 (+) True G149276
TU177010 lncRNA downstream 404425 16024844 ~ 16026512 (+) True G149427
XM_026919060.2 mRNA upstream 3703 15577183 ~ 15605737 (+) True lrrk2
XM_026919062.2 mRNA upstream 3703 15577183 ~ 15605737 (+) False lrrk2
XM_034307317.1 mRNA upstream 3703 15577183 ~ 15605737 (+) False lrrk2
XM_026919061.2 mRNA upstream 3703 15577183 ~ 15605737 (+) False lrrk2
XM_026919063.2 mRNA upstream 3703 15577183 ~ 15605737 (+) False lrrk2
XM_026919331.2 mRNA downstream 10636 15631055 ~ 15634990 (+) True si:ch211-87j1.4
XM_026919330.2 mRNA downstream 24568 15644987 ~ 15652631 (+) True slc5a12
XM_026918681.2 mRNA downstream 100859 15721278 ~ 15723719 (+) False svip
XM_026918680.2 mRNA downstream 100873 15721292 ~ 15724866 (+) False svip
XM_026918674.2 mRNA downstream 130720 15751139 ~ 15752526 (+) True fancf
trnar-ucg_5 other upstream 1788778 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1834257 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2256187 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2692186 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4305494 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 187571 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 187571 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 187571 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 420756 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2213818 17834237 ~ 17842535 (+) True G150589

Expression Profile