RNA id: XM_026919352.2


Basic Information

Item Value
RNA id XM_026919352.2
length 1843
RNA type mRNA
GC content 0.50
exon number 12
gene id pdhx
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14639460 ~ 14682317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaagcccttgaCGCTGGTTTGTGAACAGGCGTGTTTTGGACAGACTTAAGGACGCAAACATGGCGGCCTCCTTAAGGCTAGGACATCGAGCCGTTTTAACGGGTTTGAGGTTTATTCCGTTTCAAAAATGCCTTCATGTAAGTCAGAGCTCGTCCAGGCAACTGTTTCAGTCTGCATATTTATTAGGGGCTGCTCCTCTCAAAGTGCAGATGCCTGCCCTCTCACCCACCATGGAAGAGGGCAACATCGTGAAATGGCTGAAGAAGGAAGGTGAGGCAGTGGCAGTTGGCGACGCTCTCTGTGAAATTGAGACAGACAAGGCTGTGGTTACCATGGAATCCAATGACGACGGAGTACTAGCTAAAAtcctgATGGAGGAAGGTAGTAAGAATGTGCGTTTAGGGACACTCATTGCTTTGATGGTCGAAGAAGGGGAAGACTGGAAACAAGTGGAAATCCCTCCTCTTGTCTCCTCCCAGCCTGCTCCAGCTTCTCCCCCACCTGCAGCTGTACCGCCCTCCCCAACACCTGTAGCCCCGCCCTCCAGAGCTGCACCTGCCGTTGGACCgTTGCGGTTGAGTCCTGCTGCCAGACATATTTTAGACACACATGGTTTGGATCCTCACTTGGCCACAGCCACTGGACCACGAGGGCTCATCACTAAAGAAGACGCTCTAAACCTCCTGAAGAAGGGAGATGCAGGCCGACAAGCAGCTCCGGTGACTGcacctcctcctgctcctccatctcctccttctcctccttcctccCCTCATGTTCCTCCATCAGCTCCAGTCTCAGGACGGCCTCTTCACCCAGCCATCTCAGTCCCTGGAAAACCCGGAGCTCCAGGCACCTTCACAGAGATCCCAGCCTCTAATGTGCGAAGAGTGATCGCACAGAGACTAACGCAGTCCAAAACCACCATACCTCATGCGTATGCCTCAGTGGACTGTGATGTGGGTGCCGTGATGCAGCTTCGCAAAGAGTTAGCCCAAGagGAAATCAAGGTGTCTGTCAATGATTTCATTATCAAAGCTGCTGCTGTTACACTCAAAGAAATGCCAGAAGTCAATGTGACCTGGTCAGGAGAGGGACCCCAAGCGCTGGACTCCATCCATATTTCCATCGCCGTGGCGACCGATCGTGGCCTCATCACCCCCATTATCAAAGATGCGGCACACAAAGGCGCAGAGATCGCCGCCAACGCCAAGgTGCTGGCTCAGAAAGCAAGAGCAGGGAAACTGTTACCAGAAGAATATCAGGGAGGATCCTTCAGTATCTCTAACCTGGGAATGTTTGGCATCAGCGGCTTCAGCGCAGTGATTAACCCTCCTCAGGCGTGTATCCTGGCAGTGGGGCGATCCAGGGCCGAGCTGACACCGACAGCAGAGGGCCTCTGCACGCAACACCTAATGACCGTCACCCTGTCCAGCGATGGGCGTCTAGTAGACGATGAGCTTGCCTCACGCTTCCTTGAAAAATTTCGCAACAATTTGGAGAAGCCCCAGCGCATGGTCCTTGCTTAGTAAAGAGGACAGAAGAACAGAGGAGTAGAAAGAGGAGTATAACAGACTGAATGTTACCAATGATCTAGTATAGCAAGGTTAGTTGACGTTCACGAAAGaaagctatttaaaaaagaataccGGCACACAGGTAAAATGAACCATGTTACCCAAATCCcttctttaatttatttgttgttaatgaaaagattttgttttggttcatttggACTTGTATTTTAAAGATTTCACtaatatcatattttaaaatgggtCAGTGTAGAAATATAgcagtttaatttattattctcATAAATTAGGTCTTCAG

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K13997 PDHX; dihydrolipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175944 lncRNA upstream 136578 14502622 ~ 14502882 (+) True G148521
TU175875 lncRNA upstream 339224 14300017 ~ 14300236 (+) True G148459
TU175721 lncRNA upstream 554039 14085219 ~ 14085421 (+) True G148327
TU175720 lncRNA upstream 554897 14084334 ~ 14084563 (+) True G148326
TU175712 lncRNA upstream 583138 14054462 ~ 14056322 (+) True G148321
TU175974 lncRNA downstream 41034 14723351 ~ 14738350 (+) True G148551
TU176086 lncRNA downstream 121824 14804141 ~ 14804454 (+) True G148645
TU176101 lncRNA downstream 205217 14887534 ~ 14888203 (+) True G148654
TU176237 lncRNA downstream 360816 15043133 ~ 15043881 (+) True G148787
TU176315 lncRNA downstream 420161 15102478 ~ 15102695 (+) True G148862
XM_026918840.2 mRNA upstream 9021 14623295 ~ 14630439 (+) False ehf
XM_026918839.2 mRNA upstream 9022 14623295 ~ 14630438 (+) True ehf
XM_026919502.2 mRNA upstream 556633 14056421 ~ 14082827 (+) False iftap
XM_026919503.2 mRNA upstream 556633 14056440 ~ 14082827 (+) True iftap
XM_026919504.2 mRNA upstream 556633 14056492 ~ 14082827 (+) False iftap
XM_026919383.2 mRNA downstream 11315 14693632 ~ 14709434 (+) True cd44b
XM_026918802.2 mRNA downstream 127591 14809908 ~ 14812706 (+) True fjx1
XM_026919909.2 mRNA downstream 155715 14838032 ~ 14886967 (+) False trim44
XM_026919908.2 mRNA downstream 155723 14838040 ~ 14886967 (+) True trim44
XM_026919008.2 mRNA downstream 228910 14911227 ~ 14994873 (+) False ldlrad3
trnar-ucg_5 other upstream 818798 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 864277 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 1286207 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 1722206 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 3335514 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 1125673 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 1125673 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 1125673 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 1358858 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 3151920 17834237 ~ 17842535 (+) True G150589

Expression Profile