RNA id: XM_026919359.2


Basic Information

Item Value
RNA id XM_026919359.2
length 1827
RNA type mRNA
GC content 0.48
exon number 12
gene id ccdc77
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19167269 ~ 19175104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATACACTGCCTGTTTCTACTccagagcttcatttaatgcagcTTTTAAACTATTATTCATATCTGCACTCTATTTCTGGTAGTTTGGTGTAATTTCCTGATTAATAGCAAGCACTTGCGCGTTCATTGTACTGGAAAAGTTTAGTTATGAACCGGCAGTAAGAAGCATGATGGATTCTTCACCAACACGGCAGCGTGTCAGAGAAGGCTGTGAGACTAAGCAGGAGACAGACTCCCCACTGCCTCCCATCTCTGAGCGCTTGGCTTATCTCAGACCATCTCGTGAGTTGCTGGAGTTTTACAGACAGAAAGTAGCTCAGTTTGATGCAGAACATGATGACCTGCTGCAGCTGCTTGAGAAGTATAAGAGCACTACAGAGGACCAGCACAAGCTGCAGTGGGAAGTGCGTCAGCGGGAAGAGGAGATAGCAGAACTGCAGAAGGCTCTGAGTGACATGCAGGTTTACCTCTTCCAGGAGCGAGAACAGGCTCTTCGGCTATATGCTGAGAACGACCGCCTTAAGATCAAAGAGCTTGAAGACCGGAAGAAGATTCAGCAACTTTTAGCATTGGTGGGCCCAGATGCAGGCGAGATCACCTATTTTCACAGAGAGCCTCCACACAAGGTCACTATTCCACAAAAGAAACTCCAACCCAGAACGCAGGAGTATGGAAATGTGGCAAAACCAAGGCCTGGATCATCTaaagAGGGGGGTAAGAGACTGTCCAAAAGTGGAGGAGGTGAGACAAACTCTGAGCAGTACAAGAAAGATAACCAGACACTTTTACTACAGGTGGAGGCACTGCAGGCACAGCTGGAAGAGCAGACACGCCTGGCTAAAGAGCAGGTGGAGTCCCTGCTGGAGGACAGAAGAATTCACATGGAGGAGGGGCAGGTCCAGCGGCAGAGAGACCAGGAGAGACTCGCTGCATTAACTGAGAAACTCCAGCGCACGCAGAACTTACTCTATGAGAGCACCAGAGACTTCCTGCAGCTGAAGTTTGAAAGTCGATCTCATGAGAAGAGCTGGATGGTGGAGAAGGACAGGCTCCTGAGAGAGATGGACTCGTGCCAGGAGAGGCTGAGGGAGACACGCAGCTTCCAAGAGCAGCCAGGAGCCTTCACAACCCCATTGCTCCTCACCCAACCTACTCCAGAGAGCAGCCAGATGCATCGTGATGAGATCAGGGCACTACAAGAGGATTTGAAGCAAGCCCATAAGCTAGCAGACATGTACAGAGAGCAGTGTGTAGGTCTGGAGACTGATCTGGCACAGATCCGAGAGGAAGGAGACGTAGGCCGAGAGATCTTCAAGGAGCGCTCAGACAAAATGGCCAAGCGTCTCCAGTTAATGACTCAGCGTTATGAAGCTCTGGAAAAGAGGCGATCCATGGAGGTGGAAGGCTTCAAGACTGACATCAAACATCTGCGACAGAAACTCAAAGATGTGGAGAAGCAGCTCTTTAAGGTGACTCTTAACGTGGGCCCAGATCAGGACTTGGCCATCCTGCATGAAGTTCGACAGTCAAACGCCCGCACCAAGAAAATCCAGAACGAATTAAAAAGCTTAAAAGCAAAGATATACGGACTGGAGAATGAACTAAGATTCagctgaattttaaaatgtggaaGATCTTGCCCTTTTTGAGCCTATGCAGTGCAGCCTAATATCAAATTTCACCAAGGAAGGTCCCACTAGGGGTGAGAATCAGTTGTATGGATTGATTATGTTGGGCCGGTTCATTATTCAGTATCGTTATTGTGTAACATTGACATGTAGACAAAAGCCATGCAGAACAGAGGACTTGTGATTGTAtgtagtttg

Function

GO: NA

KEGG:

id description
K16757 CCDC77; coiled-coil domain-containing protein 77

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179021 lncRNA upstream 56797 19109843 ~ 19110973 (+) True G151134
TU178969 lncRNA upstream 169838 18955049 ~ 18997932 (+) True G151084
TU178978 lncRNA upstream 221828 18945275 ~ 18945942 (+) True G151093
TU178948 lncRNA upstream 371531 18747827 ~ 18796239 (+) False nfat5a
XR_004578837.1 lncRNA upstream 546949 18602145 ~ 18620821 (+) False LOC113530068
TU179305 lncRNA downstream 51545 19226649 ~ 19227893 (+) True G151395
TU179336 lncRNA downstream 142882 19317986 ~ 19393161 (+) True G151417
TU179337 lncRNA downstream 142882 19317986 ~ 19393161 (+) False G151417
TU179341 lncRNA downstream 218770 19393874 ~ 19397489 (+) True G151419
TU179343 lncRNA downstream 223174 19398278 ~ 19400388 (+) True G151421
XM_026919362.2 mRNA upstream 5622 19154291 ~ 19162148 (+) True LOC113529841
XM_026919363.2 mRNA upstream 5622 19154291 ~ 19162148 (+) False LOC113529841
XM_034307366.1 mRNA upstream 13652 19149067 ~ 19154118 (+) False zgc:153293
XM_034307367.1 mRNA downstream 29390 19204494 ~ 19216347 (+) True incenp
XM_026919684.2 mRNA downstream 46825 19221929 ~ 19226416 (+) True prnprs3
XM_026919967.2 mRNA downstream 62568 19237672 ~ 19240638 (+) True LOC113530162
XM_034307053.1 mRNA downstream 94590 19269694 ~ 19280582 (+) True thoc5
XM_034307054.1 mRNA downstream 94705 19269809 ~ 19280582 (+) False thoc5
TU179056 other upstream 42638 19121164 ~ 19125132 (+) False faap24
XR_004578793.1 other upstream 89902 19076595 ~ 19077868 (+) True LOC117598072
TU178953 other upstream 443084 18721595 ~ 18724686 (+) True urahb
XR_004578809.1 other upstream 484342 18675010 ~ 18683428 (+) False rfwd3
TU178370 other upstream 1325235 17834237 ~ 17842535 (+) False G150589
TU179313 other downstream 85520 19260624 ~ 19263893 (+) True G151401
XR_004578759.1 other downstream 174514 19349618 ~ 19384904 (+) False srpk2
TU181223 other downstream 2877510 22052614 ~ 22058158 (+) True LOC113529593
TU181225 other downstream 2877510 22052614 ~ 22058158 (+) False LOC113529593
TU181233 other downstream 2901767 22076871 ~ 22078453 (+) False arpp19b

Expression Profile