RNA id: XM_026919384.2


Basic Information

Item Value
RNA id XM_026919384.2
length 7170
RNA type mRNA
GC content 0.45
exon number 12
gene id otud7a
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16325942 ~ 16362375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagtgtgtgtgagtgagtgtatgtgtgtgaggaacAGCCTCTGGATATAACCATGGTGGTGAGGTGGCTGCTGAAGACGTCCCACTAAAAAAACCACAAACGAACTGAAAATGAGAGCGTGAAGCTCTGGCTACCACGAAGGCCACTGCTGCAGGCTGGACAGCGCAGccacatgatcacatgactcTGGACATGGACGCGGTCCTGTCAGACTTTGTTCGGTCCACAGGGGCAGAACCTGGTCTGGCACGTGACCTGCTGGAGGGTAAAAACTGGGACTTGAGTGCTGCTCTGAGTGATTATGAGCAGCTGCGGCAGGTCCACACTGCCAACCTGCCTCAGGTATTTAATGAGGGCCGTTACTACAAGCAGCCAGAGCGCAGTGGAACCCCCCAGCACCTCAACAAGCTGGAGCAATGCCTGCAGAGGCAAGAGGAGAACACTCAGGAGAAGCGTCTCTCTCGGGGCATCTCACACGCCAGCTCTGCCATCATGTCCCTGGCGAGGATGCACGTGACGGGCGAGTGCACCAGGGAGCAGTTGCCTCTCGAGATGCCCATCTACACCTTCCAACTACCTGACCTGAGTGTATACAGTGAGGATTTCCGCAACTTCATCGAGCGCGACCTCATTGAGCAATCCACCATGGTGGCACTGGAGCAGGCAGGCCGTCTGAACTGGTGGTCCACTATATGTACGAGCTGTAAGAAGCTCCTGCCATTAGCAACTACTGGGGATGGCAACTGCCTACTGCATGCCGCTTCCTTAGgAATGTGGGGCTTCCACGACCGCGATCTGGTGCTGAGGAAGAGTCTGTATGCTATGATGAAAAGcggggcagagagagaggctCTGAAGAGGAGGTGGAGATGGCAGCAGACACAGCAAAACAAAGAGTCAGGGTTGGTGTATACAGAggaagagtgggagagagagtggAATGAACTGCTGAAGTTGGCCTCCAGTGAGCCTCGTACACACATCAGCAAAAATGGCAACACCAGTGGAGGTGTGGATAATTCAGAGGACCCTGTCTATGAGAGTCTGGAGGAGTTCCACGTGTTTGTGTTGGCTCATGTGCTGAGGAGGCCCATCGTGGTGGTGGCTGACACTATGCTCCGAGACTCTGGGGGAGAAGcttttGCACCAATCCCCTTTGGAGGCCTCTACCTGCCCCTGGAGGTGCCACCCAACCGATGCCACTGCTCTCCACTGGTGCTGGCATATGACCAGGCTCACTTCTCTGCACTGGTCTCTATGGAGCAGAGAGACCAGCAGAGAGAGCAAGCCGTCATCCCTCTGACAGACTCCGAGCACAAGCTTTTAGCCCTGCACTTTGCGGTGGACCCGGGCAGAGACTGGGAGTGGGGGAGGGACGACAACGACAATGCCAAACTGGCCAAtcttATCCTCTCACTGGAAGCAAAGCTAAACCTCCTACACAGTTATATGAATGTAACATGGATTCGAATACCATCAGAGACACGAGCTCCACTTGCTCAACCCGAGTCACCCACCGCATCAGCAGGTGAAGATGTGCAGTCTCTGGCCGAATCTATGGACTCGGACCGTGAGTCTGTCTGCAGCAATTCCAACCTCAACAATGGCAAGAGTagcaaagagaaagacaaagacaagcAGCACAAGGAGAAAGACAAAGCTCGTGCTGACTCAGTAGCCAACAAGCTGGGCAGCTTCAGCAAGACTCTAGGCATCAAGCTGAAGAAGAACATGGGTGGCCTGGGTGGTCTGGTACATGGCAAAATCAGCAGGTCCACCATAACGAATGGCCGTGCTGTGGAGAGCAGTGAACAGAAGCCAAAGAAGAAGGACTCCAAAACACGCAAAGGGAGCAAAGAGGAGTCGGGCCAATCTACCAGCACGTCATCCTCTGAGAAAGCAACCAGCCCATCTCCTACTGACAGAGTTTCAGGTAACTCCTCTGGAGAAAGGCAGGCCAGTTCAGGCAAAAACCCAGATGAGCGGACTCTGGACAACTGGAAGTACAGCACAGATGTCAAGCTGAGCCTGAACATCCTTCGTGCAGCCATGCAGGGCGAGCGTAAGTTCATCTTTGCCGGTCTATTGCTGACCAGCCACCGGCATCAATTCCATGAAGAGATGATCAGCTACTACTTGAGCAGTGCACAGGAGCGCTTCAGCACTGAACAGGAACAAAAGAGGAAGGCTGAGGCTGAGAAAAAGCCCCAGACCAACGGCGCCCTCAAGAAGCCTGAACAGGAGAGCACATTTCAGAGAGAGCGCTCGGACAGCTCTCCTCCCGAGAGTTGCTCACCTGTTCTGCATCCCAGCCATATCCATACACTAAAGGGCCAGGGGAGGAATAGCCCTACCCTTGCTGCTTCCCCAATTCCCATCCCTAATGCCAACCCAACTTCAGTCCCATGCTCGTCCATGTCACCCATCCCCTTCTCCTCCCCCAGTCAAGGTGCTAAGAGACAGGAACCTATCCCTGTGTCTGCCCACTATAGCCATACGCCACCTATCCAGAGGCACAGCGTTATCCACCTGAGAGATAGCAACCCGCAGTCCTCCAGCTACCAGGATGAGCCCTATAAAATTCCAGTGGGGACACTGAAGACCTGTGCCACGTATCCGCAACAGAACCGCTCACTGTCCTCTCAGAGCTATAGCCCAGCACGCATGTCTGGGATTCGCGCCGTCCATGGCGGAGATTCTATGCCATACAGCATGGCCGGTGAGCACAAATCCCACACCTACACCAATGGCTTTAATGCAAGCCATATCCGGGACAGTCTGGAGTTTGCTGACGAGGAGCTAACGCCCCACTCATGGCTCAACCATGACAAATCCAAGCTCCGCAGTGGAACCTGCCCCATGTACTGCTTTCAGCAGAAGCGCTGCAAGAGGGAGAACTGCTCCTTTTATGGCAGGCCAGAGACAGAGAACTACTGCTCCTACTGCTACAGAGAGGAGCTAAAACGCAGGGAAAGGGAGGGCAAAGGACACCGGCCTGGATAGCCtcgctcatacacacacatgcagttcaacactgatgtgtgtgtgcgattaaAAGACAGCAGTGACATCACCACCCTCTGCACTATGCGAGTAATAGACAAATACTGGCATACTGTTTTCTAATCTATTTAAGAATGATCTCCTTGTAATCTTGTTACTTTTCTCTCAATAGCAAATTGACACTGCAGTTTACAGCTTTGGCCAGAGATTGTGctgtcattttatttgtcaGTTTGTCTTTTGTCCAAATTCACATTCTTTTACTTGTTCTAGAGTAAAAGCTCATGTCTGTGCATTTTGCTCAGTCTGTAATATAAAATTTCTAGTACTAGCTGAAAGAGATGTAAAAGCATATGTCAGTCTCCTCTGAGCTCTCCAAAAGCTACTGGGTAACTCATTTGAATGCAATACTTCAATCAATATCTCAATAGCAAGTAACATCTTTCTGCTTTGGAAATAATTCAAATGGGAGGAACAACCACTGATAAACATGgaagtttttaaaaagcaataagTTTGGTAATGAGTGCAGTCCCTCCCCTTTTTATCTATGCATTCTTAATGTCAGCCATAGTGTATTGTCTTTGTGCAGAAATGAGTGTGATTTTATCTGCCTGGATGTAAGAAGATTGTACTGAAATTTCATTTGTGGCAAATCAAAGTGTGCTGCATGCTATGTAACATGCTTTTGATTGTGCAGCACATGACTGGACCTTGTGTACATCGGTTTGCATTCCATTTAAACTCTCCTCGGTACCATCAGATGCAGTACAGTGCCATTTATTCCTATCTGTGTTTTGCAATATATCACATTCTTGGTAGCAAATGGcttctgtaaaataaactaCTACTACTCGTGACAAATTTATACAATGcaagagtaacaatataatgGAATACAAACCTTTATACACCTTTATAGTGTAGTGAACTAAAAGTGAAAGCAAATGGAACTCTGTGATGTTTGTCAATGTTGGTTCCACCCTGGTGTTTTGTAGGTATAGTGCCTGTTGCTCATCATTTGTTCTGTAAcccacaagcacacacatgccAGTCTATCAGCAGACCCACCTGCATTTGCCCTAAAAAAATCTGTGCCAAAAACATTCTCCTATATTTGAAATTCTCAGGTATTATGTTAAATGTGTATATTACTATAATCCCCAAATTGAATCACTAAATTCAAAATTGAACATCACTTTTAGCATATTATAACAAAGTTGgatttaaaataacaattaacaaGTAGGAGTGGCTTGTGACCATAGgttttggtggggcaggacaacattaataacaacatagcctcaaacaaaattaaatcacACTTGACTACAAGCTACTatctagtgatttttttttttttttggattaacCCCATAATGGGCAAACGAGAGTCAACAAGACGTGAATGAACTTGAACAAACTAAGTATGGTTATGATGGTTTCTGTTTGCTGATAATTGCTCTCCAAAGACACATTAACAACTTAGCTAGATATGTAGATAGCTAGATTAAACTTGCTAATCAAATCATTTCTAATCAGGGAAAGGACTGAAAACTATGGACTAAAAGATGGCAGTGTTCATTTTGAAAActtatgtttaaattaattttttttaaagaaattcagCTCAgtttgatacagcaggtgtAGTTCCTGTTGCCATTGTCACAGTgtgagacaaacacagaaggagtaatatcattaactgtcctgtctgctgctcctccccCACTCATAAACAATGTATTCATAGAGTAAGCATGGGGCAGAGTGATTGCTGCCCCAATGGGTGTCAGTTTGCGCTTGTTGTAGTTACCTTTTTTGACCACtatgtgcaataataactctttggagctaaatggggcacTGAGCACACTGCTCAAAGATTGCAACacatctagaaaggtgagcaaatTAATGGAACATGAGCCTATATCTGTCAAaagcatcattttttaaattgttggtcactcaaaagaggtcaTTATTATTGCAAGATTAACATCCGTTGCAAAAGATATATTTGACTTGGCTCTGCCCCACCTGCCTCTATGGATGAGCCGCCACCGTTAACAAGACATAATTAACAGCAGCAATGGTGTTATGTATGTTATACATTATGGCAGATAGCCACATCATAGCAGGCGTCTTGTAACTCTAAAACTTGCTTTGTGTACTAGGACGGCCTTGATTCCTCTGCCATTCAAAGCACCAGAAGGCCTGACCGTATCATTATTGCTAACCCCTGTGTGACCATGGGTAAAGCTAAGTCTTCTCTTAGTGCTTCTCTTCTTCAGGCAAGTGACGAATGTGAGAGCATTACTCACtgctttgtggtgtgtgttgtaatATTGAATAACCCTGCACAGTCTAACGCtcagtgtgtctgtctctcctggATCGTGTGTTCTGCCCACTGAGTTTTCTTGCTCCTTCCTTCTTAGTGCCCTCCGCTTCCTAATTTCTGTGTGACAGAATCATGGACTTTCACTGTCTTAGAAttgtaaaatatgattttatattcatttgacagttttacattaaattattaatttgcaCATTAGGTACTGATGTAAATAGTaggaggaaacaggaaaagaacaaaacaagatGAGTTTGTTGTTAACACTGTTGTCTGTGCCTTCTCTTTGTTATATGAAAGTATGGcagagtgtgtgggtgtttatgtgtatgtttttctgtgtgtatgtgcgtgtcaTTATCCTCAGTGTCCTGTAATTTGAGCtatgacaagctgtggtttcAGTCAATATAAGAGCCAAGATTAGACTGTCTGCTTGCTCACATAATTGATCACATGGAGTGAAAATAGACCGTAGACAGCAGTATACACCCAATGCATTTTGACCCATAATCCTGCAGTATTTCAGTTCAAGCCTGACAGCTACAGATAGAAAATTACACTCAGCAGCTGTCTTACAGGTCACCTGTCTCACAACTGCCCTGTGGCTCAGCAGCTGACAATAAACTCTTTTCTCCATGTCACGTTGTGCACATAAACCCACATTCCATACATGCATATGGAAAACATGGATGGATTGGAATTTAAGACCCGAAGCTAAATTATACCGTATAGTATAGTATCTTTGTTCTGAAATGCACCCTTGCTTTTGCATGAGGGCCTTCATTTGGAAACTTGGGTTTTATTACTTGTTTCGCATGCTAATATGCTAACTCAGAATTTAGTAGAAGAACCAGAATAACAGGAGCTTAATGCACTCACATTACCAAACACAAAAGTTTGTTTGCGTGCAAAGATATTTAGTGTCTTTAAATAACATTGTGTTTtaccatgtttaaaaaaacagtacacACATAAGTATGCACAGACAGAAACATCAGTCATTGTCTGTGGTTTCATGGCATGCTGCTATTATACTCTGTAAGGCAGCAGTCCAATGTTTTAACAGCATTTTATCTCATGGTTCAAGAGAGACAGCGAATTACTCaatcatcattatcataatcGGCTTAACACTGAGCGACCTCACCATCACCTCTTACTCATTAAGGGTTTTGTAAGGGCTTTAAGTGGTCTGTCTTATCCATACAACCACTAATATAGACACAACACAGGTTTCCATAGCAGGGAAGACACTtatgatataatgcattactGATAGTGGGAGGCTACCTTGAGTATGTGCTTGATAGAGTGCTTATGACATGTTAGCACAAAAGACTTGATTGTACATACCCACTATTTGAAacgaacagataatgtgttctaaactaatacaaatacagatatgaataggtgGCGCGCTATATTCGCATCTGGTTGTGACTAGCGCTGTGCATCCTGtgggacacaacaaaaaaattgcGCAAGAgggagtttttattttcatgttgatAAGGGGTCAGATATGAAACTTGTGGGCATGATCAAGCAGTGAGATATGAAGCTttcaggacaaagaaagactaCATTCACTAACATGAAGTATGCATTTACAGCAATgtatttacagtgttcattcattcatccttagtaactgcctgatcaaggtcataatgttttaaaattggctgctggtttgtttatattttgggaaccCAACAAAATTTGGTAGAAAATATCATGGACAGGAACAAACATAAAGAAAAACTGCAcaagtgggatttaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177254 lncRNA downstream 8016 16309890 ~ 16317926 (-) True G149632
TU177277 lncRNA downstream 70456 16254647 ~ 16255486 (-) True G149649
TU177268 lncRNA downstream 74857 16249161 ~ 16251085 (-) True G149643
TU177252 lncRNA downstream 87834 16233429 ~ 16238108 (-) False G149631
XR_004578686.1 lncRNA downstream 94133 16230614 ~ 16231809 (-) True LOC117597941
TU177366 lncRNA upstream 60291 16422666 ~ 16424604 (-) True G149718
TU177505 lncRNA upstream 98416 16460791 ~ 16461045 (-) True G149836
TU177511 lncRNA upstream 133796 16496171 ~ 16498461 (-) True G149841
TU177528 lncRNA upstream 250609 16612984 ~ 16614416 (-) True G149854
TU177779 lncRNA upstream 656581 17018956 ~ 17019183 (-) True G150089
XM_026919996.2 mRNA downstream 57956 16265562 ~ 16267986 (-) True trpm1b
XM_026919070.2 mRNA downstream 63003 16256510 ~ 16262939 (-) True LOC113529693
XM_026919995.2 mRNA downstream 71446 16251344 ~ 16254496 (-) True LOC113530180
XM_026918917.2 mRNA downstream 87785 16236143 ~ 16238157 (-) True rps27l
XM_034307238.1 mRNA downstream 97608 16219376 ~ 16228334 (-) False acsbg1
XM_026918976.2 mRNA upstream 81080 16443455 ~ 16458395 (-) False bnip2
XM_026918977.2 mRNA upstream 81080 16443455 ~ 16458395 (-) False bnip2
XM_026918974.2 mRNA upstream 81080 16443455 ~ 16458395 (-) False bnip2
XM_034307284.1 mRNA upstream 81080 16443455 ~ 16458395 (-) True bnip2
XM_026919690.2 mRNA upstream 178477 16540852 ~ 16546270 (-) True anxa2a
XR_004578830.1 other downstream 333848 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1097910 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1237926 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1513237 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2493053 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 390801 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 690991 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1392009 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1843778 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 1942263 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile