RNA id: XM_026919392.2


Basic Information

Item Value
RNA id XM_026919392.2
length 2559
RNA type mRNA
GC content 0.43
exon number 14
gene id nap1l4a
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 12837011 ~ 12850393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGGCTGTCGGAGAGCGTGACGACTATTCCTCCAATGAGAGACGGGGATGTTGTGAGGCCCGTTTTTGCACCTTCTCAGTTTGTTAAGAGCGTGAGGACGGCCTGAAGCCTGAGcTAAAGGACATCTGTGATGGAGGCacgaaaaaatgaaaagaatgaagCCAGAGGTAAGGGAGGAAGCAAAGGCTCACAGGGTGACAGACCAGAGATTATCTCTCAAGTAGAAAGGATACCGAATGTCAGTGCCCTGCCCAAAGCAGTGAAGAGGAGAGTGTACGCTCTGAAGAGACTGCAGGTCCAGAGCGCTCATATAGAGGCCAAGTTCTATGAGGAAGTCCATGAGCTGGAGAGGAAATATGCCGGTCTCTACCAGCCCATCTTTGTCAAGaGGCGGGCAGTGGTGTCTGGAGCAGTGGAACCCACAGATGAAGAATGCGAGTGGCACAGTGAAGGCGAGGAGGAAGAGCTGTCTGAGGATATGAAGAAGAAGGCTGCTctggaagagaagaaagaagattCAGCCACTGCTGAAGACCCTAAAGGCATCCCAGAGTTCTGGCTCACCATCTTCAAACATGTGGACATGCTGGGGGAAATGCTACAGgagTATGATGAGCCCATCCTGAAACACTTGCAGGACATCACGGTGAAATTCTCTCCCCCAGGAGAGCCAATGAGCTTCACTTTGGAGTTCCATTTCGAGCCCAACAGCTACTTCAGCAATACCATCCTCACTAAAACATACAAGATGAAATCAGAGCCAGATTCAGCTGACCCTTTCTCATTTGAGGGGCCAGAAATAGTGGACTGTGAGGGCTGCAAGATAGACTGGCAGAAAGGCAAGGACGTAACTGTGAAAACTATTAAGAAAAAGCAGAAGCACAAAGGTAGAGGAACAGTGAGGACCATCACCAAGGAAGTGCCGCAGGATTCcttctttaatttctttaaccCTGTCAAAGCATCTCCAGATGGAATGgaTGAGGACCTAGACTTCACTCTTGCCACAGATTTTGAGATTGGTCATTTTTTCAGAGAGCGGATCATCCCCAGAGCAGTGCTGTATTTCACAGGAGAGGCTTTGGAAGATGATGAAAGCttCGAAGAGGAGGATGTTGAAGAAGGCGAAGAGGAGGACCTTGATGAGGAGGGTGAAGAGGAAGATGACGGCGAAATTGACCCCACAaaacagCCTCAGCCAGCAGAGTGTAAGCAGCAGTAAGAACAGAGATGGCCCCGGAGTGATCTCGTCCCCTGCTGGACCTGCCATATATCCTCCAAACAATGCAATAGAAATCCAAACACCATGTAGGAAATGCATGATCATTTATGTTTACGTCACACAGAGGTTACCTCTGTGTACAAAATAGAGCATTCAGAAAAATATGAGTGACTACATACAACAGTTCTGCACTTCACCCTTTTTGATCTAAAGCATCTTTTGTAAGCTCTTATGTATTTGACTGGAAGTTTGTGCAAAGAggttattttgtgtgttttccctccCCAGTATATTTATCTTTTCTCTGTTCTTTGTCACTGTTCCATGGTTGGTGACATTGCAGAATCCTGAATATATCCCTGACGGTTCTCACACTGTAGGTCACTCagggttttgttgtttgtttgttttttttttttttttttttttttaaaaaaacacaccagtaCAGTAGTTCCTGACGAGATGAAACTGCTGTTAAGTAACTTATAATGAAACCTTTCTCTCTGTTACAGCACAGTTAAGTCAGTGTTAATTTTGGGAAATCTTCATGTCTATCCTCATGTAGCTGGATGAAATGGAGTACTGTAACTGAAAGTAGCTAGGATTTGCCTTTAAGGCTGAGATCAGTGCCAACAGAGCAGAGCAATCACTTGCATTAGAGAGCTGTGTTGATACCAGTGGGTACTATTATAAACTCAGCGTATGTGTTTTAACACACTGATTTCTGTTGATCTTAGCCCTGCTAACCAGAACAAGCATCACTCATGCGCTGACTCTTCTACCATAAGTCTGATTTTCAATGTCCAATGGCcaataaggtttttttttttttcttaataatttcTGATTTAGCActgtttattcttttatatttgctttaaacATAAGACTTAAGGTTGCCAATGCATAGTATTTGCTACTCAGAGTGATGGGATTTGtaacatttttcttaattttgtttgatCAAGCAGGTGAATGTTAGCCTCATGGCTTTCTTTTGCACATCCTACCATGTTAGACCTCACTGAAAAAAGATGTGGAAAATACAAAGTGCTGATCACTCATGTTAGACAACACTGACATTAAACAAGAAGCACTTTGGTCTGGATTTTCAACCAGGTTTCTTTTGTTCTGTGATCATAACATTCATGcatagaatcttttttttttatgtagctcTTGCTTGAGAAAGGGCAGATCTTAAAACCACTGCCCAAGTATTAACCATATGCTAGCAATGGCCTTACTGGGATTGTCTTGGGTTTTAATGCAATATTGTTTTCAATTTGTATAAAATAGTCAAGAGAATTCTATTAAACATTGTGTAATGTGA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174677 lncRNA upstream 4945 12831828 ~ 12832066 (+) True G147479
TU174670 lncRNA upstream 25682 12810522 ~ 12811329 (+) True G147472
TU174636 lncRNA upstream 145589 12690927 ~ 12691422 (+) True G147438
TU174634 lncRNA upstream 146532 12690201 ~ 12690479 (+) True G147436
TU174004 lncRNA upstream 736445 12092180 ~ 12100566 (+) False G146883
TU174762 lncRNA downstream 82488 12932881 ~ 12937704 (+) True G147554
TU174778 lncRNA downstream 88204 12938597 ~ 12985366 (+) True G147560
TU174767 lncRNA downstream 89013 12939406 ~ 12943061 (+) True G147558
TU174775 lncRNA downstream 95166 12945559 ~ 12995058 (+) False G147560
TU174803 lncRNA downstream 118754 12969147 ~ 13073808 (+) True G147582
XM_026919663.2 mRNA upstream 30558 12781288 ~ 12806453 (+) True si:ch211-236l14.4
XM_026919747.2 mRNA upstream 152190 12680740 ~ 12684821 (+) False igf2b
XM_026919748.2 mRNA upstream 152190 12681130 ~ 12684821 (+) True igf2b
XM_026919481.2 mRNA upstream 162430 12666989 ~ 12674581 (+) True th
XM_026919319.2 mRNA upstream 208514 12619213 ~ 12628497 (+) True uevld
XM_026919520.2 mRNA downstream 12108 12862501 ~ 12863555 (+) True phlda2
XM_026919270.2 mRNA downstream 272750 13123143 ~ 13161929 (+) False dusp8a
XM_026919271.2 mRNA downstream 276093 13126486 ~ 13161929 (+) False dusp8a
XM_026919272.2 mRNA downstream 301353 13151746 ~ 13161929 (+) True dusp8a
XM_026919079.2 mRNA downstream 320302 13170695 ~ 13215991 (+) True mob2a
XR_004578672.1 other upstream 1530693 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 1533065 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2289219 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 3994745 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 4792601 8044338 ~ 8044410 (+) True trnaa-agc_11
TU174750 other downstream 66526 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 498933 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 910941 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 970197 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2957597 15807990 ~ 15822591 (+) False LOC113529564

Expression Profile