RNA id: XM_026919431.2


Basic Information

Item Value
RNA id XM_026919431.2
length 4601
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC113529869
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 12579360 ~ 12598845 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCAGCATCCGTGAGACAAAACCACTGTGGCAACTTCTCCAAAACTGACAGAGCCCACAGCGAAACAGACAGAGCCCAGCATGTCTACTGAGGTGATCCAGTCCAGTGGGAGCAGAAAGCAGCAGAGCTCAGAGTTCCACATGTCCTCCTCCAGCAGCTCTTATTCCGTCAGTTCCACAGGTTTACGCAAGGTCACTCACACCTCCAAGGTGCTCGAGGAGCAGTCAGCAGTGCAGCGTAAGACTTCAGCTGTGATGGAGTCATTCAGTCAGGTGCAGAAGAGCTCTGAAATCCCTCCCGGAGAGAGTATTCCTGAGTTTGAGGAGAGACCTCGCCCTGTTACAGCTCAGGAAGAGGATAATGCTGTCTTCAAAGCAAAAGTGTCTGGCAACCCCATTCCTAATGTGACCTGGACCAGAGAAAGCGGCAAACAGCTGACggagggtgccaagactttctACGATGACATCAATAAGCAGTATGTGTTAAAGATTAAAAACCTAACTCTGGAGGATGCTGATGTGTACAAGTGCATCGCATCTAATGACCATGGGGATGCCATTTACTCCATCTCGCTCATTGTTACTGAAAATCCTGCACTGGACTTTAAGAAAAAGCTGAAGAAACgGAGTGTAGAGAAGCGAGAGAAGAAGCCTCCAACTGAAGAGGAGATGCTGAAGATTCTGGCTGGAGCTGATAAGAAGGACTACGAGCGCATCTGCGCTGAATACGGCTTCACTGACTTCAGAGGCATCCTCAAAAAACTCAaggagatgaagaaaaatgtggaTGTGGAAATGGTTAAAGTACTGAAGCCACTGGAGGATGTAACAGCGAAGATAGACTCCAATGTAGTTTTTGACACAATTTTGGAGTTGAAAGATCCAAATACGAAGATGCTTTGGTTTCAGGGCGACGAGTTGCTGCGAATCCAGTACTCTCTTGGGAAGTATGAAGTTAAACAGCTGGGTACTAAACACATGCTGTGCATCACCAGTGTGTGTATGGCCGACTCTGGCACATACACTCTAAAGGTTGGAGAAAAGATCCTGTCTGCTAAGCTCACTGTCATAGATGAACCACTGAAGTTCCTCACAGATCTGAAGCCTTTGCgagtgatggagagacagaccGCTGTGCTTGAGTTGCGGCTCTCGAAGAAGACTGACAGCCCTCTGGTATGGCAGTTTAAAGGGAAGGAGCTAAAGCGAGATGAGaagtttgatgtgtgtgtgtctgatgatgGCCTCACATACACTTTAAAGATCAAGGATGTGCGTCCCAGTGATACTGGTGACTATGCCATCAGTATTGGAGATTTGACCACTACAGCCTCTCTATTTATTGAACGAATCCCCATCAAGTTTGTGAGCCATCTAAAGAATGTACGTGTGAAGGAAAAGGGTAAGGCCAGGTTGGAGGCTGAGATGAGCTCAAAGGATGTTCACGTGAGGTGGTTAAAAGATGGAAAAGACATCACTAACAACCAACGATACATCTTCGTGAGGGAAGGCAAAAGAGCTGAGCTTATCCTCGAAGACTGCGAGCTGTCAGACAGTGGAGAATACACCATAGTGTGCATACAGGATAATGACACCCATGAGTATGTCAGCTCCTCAAACCTCACAGTGGACGAGAGATTTGCCACTGTGAAAAGTGGAATGTCAGATGTTCAGTGTCCCACGGGCTCAGCTGCAGAACTTTGTGTGGTTTTGGATGATGAGAAGGTAGATGGTGTCTGGCTAAAAGATGGAAAAGAAGTTACAGATCTGAATGGGCTGCAGGTGATAAAGCAGGGGGCAGTTCACAAGCTGGTGTTCATTAACGTAAATGATAAGCATGGAGGCAAATACTCTTTCAGTGCCAAAGGAGCTGAGAGTGAGGCAGTTCTCCGTATAGCAGATCCTCCTGTTATTGATCCCACAATGCTGGAAATGCTATCCAGCCAGCCGGTGACAGTGAAAGCTGGTGAGGCAGCCACCATCAGGATCCCCTTCAAGGGCAAACCTGCCCCAAAGGTGACATGGTATAGGGATGGTTTGGAGCTGGTGGAGGACAGCCGGACGGTCATCGAACGCAATGGAGCCTCCAGCACTCTGATACTCAGTAAATGTGTTAGAGAAGATAGTGGCACTGTCACGCTTAAACTTAAAAATGACTGTGGCTCAGCTACCGCCAGCGTGCAGCTCAGTGTAATTGACCGTCCTAAACCCCCTCAGGGTAAAGTGGATTTTACAGAGTGTAGCGGCAAGTGCATAACCATGAAGTGGAAAGCACCACGAGATAATGGGGGGCAGAAGGTGACCAGCTATGTTATAGAGAGGCGCATAGCTGGAAAAAAGTCCTGGAATAAGGTTGGGGAGGTGGACGGAGACACCACCAGCTTCTGTAATGACAAGGTTGAGGAGGGGAAGGCATATGAATACCGCATCCGAGCACTCAACCCCCAGGGTTTGAGTGATCCTTTAGAAACTGAGCAGGTCTATGCTGGAGAGCCTGTTGAGCCTCCTGGTATGGCTCCTCAACCTCAGATTGCTGATGTGACTAAAGATGAGGTCACAGTGATGTGGGTTCCTCCAGTGCAAGATGGTGGCGCTCCTGTTCTGGGTTACATAttggagaggagaaaaaaaggaagtagCATGTGGGTGTCTGTCTGTAAGGAACTAATCCAAGACACAAAGTGTGCAGTAGGTGGTCTAGTAGAAGACATAGAGTATGAGTTCAGAGTGACTGCTGTTAACAGAGCTGGAGAGGGAATTCCCAGTGCAGCATCAAACTCAGTACTGGCCAAAGACCCCACACGTGCCCCTGGCCTTGTTAGAAACCTTCACGTAATAGACTCCTCCAACACCTCCATCTCACTGGCTTGGTGTCCCCCCGAGATGGGAGACGATCCCTCTGGCTACATCCTAGAGGTTCATTCTGAACATGCAAAGGAATGGACCAAGTGCAGTAAAATTCCCATCACCAGCACCTCATACACTGTTGGCTGCCTGCAAGAGAAGATGAAGTACTTTTTCCGTATCAGAGCTGTTAATGAGGGTGGCATTGGAGAACCGATAGAACTAGAACAAGGAGTTCTGGCTGTGCCACCACCAGAAGTGCCAAAATTTGATCTCCAGGCCAAAGTGAAGAATGAGGTGGTGGTGCGTGCTGGATGTGCATTAAGTATTCCCGTTTCCTTCAGTGGCTCCCCTTCCCCAAAAGTGACCTGGCTTAAAGATGGCATTGTGACCAATGGTCGAGAGGTCATCACTAAGGGGAAAACCTATTCGCAGTTTCTGATCAGCTCTTGCCAGCGTTCCGACTCTGGAACCTACCGCATCAACCTCCGCAATGACTGTGGGGAGGTCCACTATGACATCACTGTCCATGTCACTGATGTCCCTCGTCCTCCTAAGAACCTGCGTCTGGTGGAGGAGGTCCAGGGCACCGTGACGCTGCAGTGGGATCACACCCCTGACCTGGCTGATGATGAACACACCCATTACATCATCCTCAAGAGAGACACCAGCACGCCCACCTGGTTCACAGCTGCTGAGCGCATCTTCAGCAGCAAATACACAGTCACTGGTCTCTTTCCAGGACGCAAGTACTACTTCCGGGTCATCGCTCGCAATCACATTGGAGAAAGTGACCCTCTGGACACAAAGGAGCCTTTTACAATTGAGAAGGAGCATGAATGCTTCACCTTGTGTATGAAGCCATTCCCACGTGCACAGCATGAGGTCAAGCCTGCCTTCATTTTGCCCCTAAAGGATCATTCTGTGCACCGTGGAAATGACTGCACCATGAGCTGTGCCTTCATTGGCTCGCCCATGCCACATGTGTCCTGGTACAAGGGAGACAAGGCTATCTCAGACAGTCCTCGCTACTGGCAGAGTAGCACTGATGGGGTCTGCACCCTCACTATCCCCATCTGCACAGTTCAAGACAGCGGAGAGTATATCCTGGTAGTGGAAAATAAGCTGGGGAAGGCCGAATGCAAGTGCAGCTTGGTTGTTTTTGATAAAGATGATAATAGAATGCTGGAACGCCTGGCTCAGGAttctggaaaagaaaaacacattagtTAAGCAGGGTACAAAGCCAATGAACTTATCTGCAATTCTCAAAAAGCATCATTAATTATCACAAGGAGTTTCTTCCAAAAAGAATCTTAGCTGAAATTTTAATTAGCAGACAAAATTTGTGTAAAATGCTATGAAATTCTATTAAACAGTTCATCAGATCTGAATATCTTATCTATCATACTGAGAATAAAATACATCAAACAGACAAGATACAAGATACAGTGGCCTTGTAGTTCGAGACATAATCAGACAGAATCAGTTATCACTAATTTGCACCACAGAGGTTTTAAATGTGTGAAACGGTTGTGTTTGGAACGTGGAAAGGCTGTGAGACAGGCTGCAGTTTCATTTTAATAGCACGAGCAACCATGGCTTTGAACATAATAAAATCTCTGACACCAGGACAAATTATAGTGCTGATGTTGAACACATTCAAACTAAATTTGTGATTCTAAGCAATATCTTTCTCCCTGATTAATCATCCTTCTAAATGCAAAATGGTTTAAGCTGTATTATCTTCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174004 lncRNA upstream 478794 12092180 ~ 12100566 (+) False G146883
TU174005 lncRNA upstream 483199 12092180 ~ 12096161 (+) True G146883
TU173998 lncRNA upstream 518774 12060295 ~ 12060586 (+) True G146877
TU173883 lncRNA upstream 649540 11925868 ~ 11929820 (+) True G146791
TU173854 lncRNA upstream 748563 11801077 ~ 11830797 (+) True G146765
TU174634 lncRNA downstream 91356 12690201 ~ 12690479 (+) True G147436
TU174636 lncRNA downstream 92082 12690927 ~ 12691422 (+) True G147438
TU174670 lncRNA downstream 211677 12810522 ~ 12811329 (+) True G147472
TU174677 lncRNA downstream 232983 12831828 ~ 12832066 (+) True G147479
TU174762 lncRNA downstream 334036 12932881 ~ 12937704 (+) True G147554
XM_034307723.1 mRNA upstream 181492 12207975 ~ 12397868 (+) True brsk2a
XM_034307721.1 mRNA upstream 183304 12207975 ~ 12396056 (+) False brsk2a
XM_034307722.1 mRNA upstream 183304 12207975 ~ 12396056 (+) False brsk2a
XM_026920029.2 mRNA upstream 183304 12207975 ~ 12396056 (+) False brsk2a
XM_026920030.2 mRNA upstream 183304 12207975 ~ 12396056 (+) False brsk2a
XM_026919997.2 mRNA downstream 13196 12612041 ~ 12617420 (+) True spty2d1
XM_026919319.2 mRNA downstream 20368 12619213 ~ 12628497 (+) True uevld
XM_026919481.2 mRNA downstream 68144 12666989 ~ 12674581 (+) True th
XM_026919747.2 mRNA downstream 81895 12680740 ~ 12684821 (+) False igf2b
XM_026919748.2 mRNA downstream 82285 12681130 ~ 12684821 (+) True igf2b
XR_004578672.1 other upstream 1273042 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 1275414 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2031568 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 3737094 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 4534950 8044338 ~ 8044410 (+) True trnaa-agc_11
TU174750 other downstream 318074 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 750481 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 1162489 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 1221745 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 3209145 15807990 ~ 15822591 (+) False LOC113529564

Expression Profile